RNA id: TU63139


Basic Information

Item Value
RNA id TU63139
length 361
lncRNA type sense_over
GC content 0.47
exon number 2
gene id AMCG00008634
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6920707 ~ 6933089 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNTGGCGAACCTTCTCTTTTTAGTTGGAGTTGGAGtatctaaaacagaaaacaagGTAGTCTGTTCGGTCATAGCAGGAGTCCTCCACTACCTCTTCCTCGCTACCTTTGTGTGGATGTGGCTGGAGGGAGTGCACCTGCTTCTGTTAATAAAGAACCTGAGAGTGGTCAAGTACAGCAGCAGAAACCAAGTGTGCACCCTTCACCTGCTTCTAGTGGGATATGGCATTCCTGCTGTCATTGTGGCCATCTCTGCTGGAGTGTACTCAGAGGGGTATGGAACAGCGAAAAGGTGCGTCTGCCACATATGTACTTCAACAGCATCATGTTTATTAGTGTATTATCCACTGTTTGCCTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63079 lncRNA downstream 19351 6905340 ~ 6905577 (-) True G50437
TU63077 lncRNA downstream 20539 6904077 ~ 6904389 (-) True G50435
TU63071 lncRNA downstream 39241 6839077 ~ 6885687 (-) False AMCG00008633
TU63069 lncRNA downstream 39241 6842527 ~ 6885687 (-) True AMCG00008633
TU63004 lncRNA downstream 218639 6692806 ~ 6706289 (-) True G50381
TU63163 lncRNA upstream 440645 7366625 ~ 7366930 (-) True G50496
TU63185 lncRNA upstream 453058 7379038 ~ 7379487 (-) True G50514
TU63230 lncRNA upstream 728100 7654080 ~ 7657391 (-) True G50557
TU63231 lncRNA upstream 736172 7662152 ~ 7662442 (-) True G50558
TU63233 lncRNA upstream 742868 7668848 ~ 7676186 (-) True G50560
AMCG00008632 mRNA downstream 9484 6908774 ~ 6915444 (-) True AMCG00008632
AMCG00008633 mRNA downstream 62110 6847579 ~ 6862818 (-) False AMCG00008633
AMCG00008630 mRNA downstream 95229 6819964 ~ 6829699 (-) True AMCG00008630
AMCG00008631 mRNA downstream 120420 6798763 ~ 6804508 (-) True AMCG00008631
AMCG00008627 mRNA downstream 182699 6720582 ~ 6742229 (-) True AMCG00008627
AMCG00008635 mRNA upstream 73574 6999554 ~ 7009561 (-) True AMCG00008635
AMCG00008636 mRNA upstream 287689 7213669 ~ 7276093 (-) True AMCG00008636
AMCG00008637 mRNA upstream 390146 7316126 ~ 7337849 (-) True AMCG00008637
AMCG00008638 mRNA upstream 415454 7341434 ~ 7342284 (-) True AMCG00008638
AMCG00008642 mRNA upstream 461072 7387052 ~ 7402820 (-) True AMCG00008642
TU62870 other downstream 1039478 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 1132344 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 3147574 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 4016263 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4839922 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 21909 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 219645 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 975355 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 1208601 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1343043 8269023 ~ 8269326 (-) True G50710

Expression Profile