RNA id: AMCG00008636


Basic Information

Item Value
RNA id AMCG00008636
length 4123
RNA type mRNA
GC content 0.43
exon number 33
gene id AMCG00008636
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7213669 ~ 7276093 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAGGATGCGTGCATACGTGATATGTCTCACTCTGTGGGCTTTCTCCTTCCCTGCACTCTTCAAATGTGCCCCAGTGTACATTCTTACTGCCCCAAATATCCTACGAGTTGGAAGTGATGAAGATATCGTTCTTGAAGCACACGATTATAGTGGAGGAGACCTAATCGTGGAAGTCTCTGTACTCGATTTTCCAGCAAGAAAGCAGAACCTGCATAATAGCAGAGTTATATTGAAATCAGCAGAACAGTACCAagcaaaatatacaattaagTATGTCTACCTATCAGCAAAATTTGGTACTCAGGTGGTGGAGAAATCAGTTCTTGTTTCCTTCCAGTCTGGTTACATATTTGTGCAGACTGATAAATCCATATACACCCCCACTGACACAGTACTTTTTAGAATCTTTGCTCTGTCCAACCGTCTGGATCCTATAAGAAATGCTGTTTCTGTTGAAATTATGACTCCTGATGGTATTATTATTCAGAAAGATCTATTATCACCAATAAATGGAATCATTTCTAGTTCCTATAAACTACCAGAAATTGTTAATGTGGGTACCTGGAAGGTGGTCACAAAATATGAACAGACGCCTCAGAAGAATTTTACAGCAGATTTTGAAGTTAAGGAGTATGTGCTGCCAAGTTTTGAAGTGAAGCTGGAACCACAACAACTGTTTTTCTACATAGATGATCAATCACTTACTGTGGAAATATTTGCAAGGTTCTTGTATGGAAAAGAAGTGTCAGGGACTGCATATGTGGTGTTTGGAGTGATAACAGAAGATGGTGAAAAGAAAAGTTTCCCAGACTCCCTACAGAGAATAGAAatCAAGGTTGGAAAAGGAACAGCCACCTTAACAAGAGAcatgattttaaagacattcCCAGACATGGAAAAGCTTCTTaacaaatatatctatatatctgccTCTGTCTTGACACAAAGTgGCAGTGACATGGttgaaggagagaggagaggaatcCAAATTGTTAAATCCCCTTACACTATTCATTTCACAAAGACTCCTAAATACTTCAAGCCGGGAATGCCATTTGATGTCATGGTTCTTGTGACAAATCCAGATGGCTCACCAGCCAAAAACATTGATGTTGCGGTTCAAACTGGAGAGACTTCAAGAACCCAAGCTGATGGGACAACAAGGATGACCATTAATACTGCAGGGGGCAGTTCACGTCTAGACATCACTGTGACAACAAGAGTACCAGTTCTCAAGGCAGAGCGTCAGGCTACAGAAAATATGGTTGCCTTGCCATATAAGACACAACAAAATTCAAAAAATTACCTACATATTGGTATCCAGGCAGCTGAATTGGAGCCTGGAAGAAATCTCCAGATTAATTTCAATCTTGGCAATAGCCCAGGGATGCAAGAACAGATTAAGTACTTTTCGTATCTgattttaaacaaaggACAAATTCTTAAAGCTGGACGGCAACTCAGATCTCCTGGACAGTCACTTGTCACACTATCATTACTTATTGAAAAAGACATGATCCCCTCTTTCCGATTTGTGGCTTATTATTATGTGACAAATGCAGGAAGAATTGAGGTTGTTTCGGACTCGGTCTTGGTGGATGTAAAGAAGACATGCATGGGAACACTTCGTGTTAGTTCAGGTAGTGACAGGGTTTCATCATACAGACCACGCAAGCCATTCAGTATGACGATAACAGGTGACCCAGGGGCGAAGATCTGGGACACCATAGAGAAGAATGACATTGGCTGTACAGCTGGAAGTGGCAGCGACAATATGGGTGTCTTTTATGATGCTGGGCTTTTGTTTCAACTAAGCACTGGTGATGGTACAAAATCTAGATCAgATCCTAAATGCCCAGAGGTTCAAAAGAGAAAACGCCGCTCTCTGATTCTGGCTGATATCATGACATCTCTGGcAAGCAATTACTCAGGATCCCTGCAAAAGTGCTGTCGGGATGGAATGCATGAGAATATTATGGATTACACCTGTGAAAAGAGGGCTGAGTACATCATCGACAGTAAAGAATGTGTTGCTGCTTTCCTGCACTGCTGTAAAGAGATTGCCAAAAAACACAAGGAAGGAAGGCAGGAAATATTAATTCTTTCACGGAGTGAAGAAGATGATAATTACATGAGTGATGATGAAATTGTGTCCCGAACTGAATTCCCAGAAAGCTGGCTGTGGCAGGTGGAGACATTACCCAGAGTGGCCACAGAGAAAGACGGtCTTGCTACAAAGGAGATCAGAAACTTCCTGAAAGATTCAATCACCACTTGGGAAATTACAGCCATTAGCTTAATTgaacaaaaagGAATCTGTGTGGCAGATCCCTATGAGATTACAGTGATGCAGGACTTCTTCATAGATCTAAAGCTTCCCTACTCAGTAGTGCGAAATGAACAAGTGGAAATTAAGGCTGTACTTTACAACTATTTAGACCAGAAAATACGagaGGAAGTGTACATTGATCCATTATCTTCTCGAGCTGTCCCCTTTGTCATTATCCCTATGCAAATTGGGGAGCAGGATATTGAGGTTAAAGCTTCTGTCTATGGGGAATTCATTGCTGATGGTGGAAATCAAGCAGAAAAGGTTGAAAGAATTGCCCTGAAGTCAATAGTGCCAAATACAGAGCCCCAGACTTTTATCAGTGTGACAGGCGAGCTTGTAAGCGAAACCATTGTAAGTGCCATTAATGGTGCCTCTCTGAAAAACCTAATCATACAGCCCGGTGGGTGTGGAGAACAGAACATGATTGGCCTAACTTCACCTGTAATTGCCACTCATTATTTGGACAATACTGGCCAGTGGGAAACAGATATACTCAGCAACTGGCATTCCGCAGAACTGACAACTCATATGCAGCATGGACACATAGGCCTGGCAGCACCTGCATATGTGGCAAAGGTGTTTGCATTGGCTTACCCCCTTATTTCAGTGGATGACAAAGTGTTATGTGATGCAATAAAATGGCTGATTATCAATAAACAGAATCCTGATGGAATCTTCAAAGAGGATGCCCCTGTAATTCACGGAGAGATGGTGATGGAAAGCAGCATAGGAAAAGCAGTCACATTTTTGGACAGACGCATACAAAGCCTAACAAACCCATATGCTGTAGCTATGACTTCCTACGCATTGGCTTTGACAGAAAAGAATCACTTAGGAACTTTACTGAAATTTACATCACAAGaTCAATCCCACTGGCCTGTGCCTGGGTCCCATCTTTATTCCCTGGAGGCCACAGCCTACGCTCTTTTGGCCCTGTTGAAGCTGAAGGAATTTGAGCGTGCTGGCCATGCAGTGGAATGGTTAACAGAACAGCGGTTCTATGGGGGTGGTTATGGGTCTACTCAGGCCACAATCATGGTATTCCAAGCGGTGGCTGAATACATGATCCAAGTACCTCTGTACAAGGATATAGATCTGGATGTGGGGATCCAGCTGTCGGGCCGTAGCCAACCagttaaatggaaaataaccaGCAGTAATGCTTTTCAAACCAGGTCACAAAGGGTAATGACCCTCTACAATGCTATACCCGATGAGAAGATAACTGCTTGTAAAGCCTTTGAACTAAATGTGAAAATTGACAAAGCTCCAAatgGAAACCTGAAGGTGCGCAAGAAAGCTTTACACTCACAATTGAAACAACGTCCCCTGACAAAATCGCCTTCAAAGTACACCGAATGTTTGGTGTGGGTCTGCTCCAACCCGCAGCAGTTACAATCTATGAATACTATGCCAACGGTCTGTTCTAAGACTAggacatttaaacaatttcacTGTTCATTTCCCATTGCATTTAACCAGATGAATTCAAATGAGGTCATGTATTTTGCAGGAAGTGATTTTGGAGTAGCAGGAAAGACGAGAGTGTTTGCTGCCCATTCAAATTGCAGAGCAGCCTTGCATATTGAACAAGGCAAATCATATCTTATCATGGGGAGATCTGCTGACCTGTTGAACTCTGAAAAAGGGTTGCTCTATATCCTTGGTGGCGGGACGTGGATAGAGTGGTGGCCAACAGACTTGGAATGTCAGACTGGTGACCGCCCACCCTTGTGTGCGGATATTAAGGATCTTGCATCTGAACTTGTTACTTTTGGTTGCCCCact

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0002376 immune system process biological_process
GO:0052547 regulation of peptidase activity biological_process

KEGG:

id description
K03990 C3; complement component 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63139 lncRNA downstream 287689 6924928 ~ 6925980 (-) True AMCG00008634
TU63079 lncRNA downstream 308092 6905340 ~ 6905577 (-) True G50437
TU63077 lncRNA downstream 309280 6904077 ~ 6904389 (-) True G50435
TU63071 lncRNA downstream 327982 6839077 ~ 6885687 (-) False AMCG00008633
TU63163 lncRNA upstream 90532 7366625 ~ 7366930 (-) True G50496
TU63185 lncRNA upstream 102945 7379038 ~ 7379487 (-) True G50514
TU63230 lncRNA upstream 377987 7654080 ~ 7657391 (-) True G50557
TU63231 lncRNA upstream 386059 7662152 ~ 7662442 (-) True G50558
TU63233 lncRNA upstream 392755 7668848 ~ 7676186 (-) True G50560
AMCG00008635 mRNA downstream 204108 6999554 ~ 7009561 (-) True AMCG00008635
AMCG00008634 mRNA downstream 280580 6920707 ~ 6933089 (-) False AMCG00008634
AMCG00008632 mRNA downstream 298225 6908774 ~ 6915444 (-) True AMCG00008632
AMCG00008633 mRNA downstream 350851 6847579 ~ 6862818 (-) False AMCG00008633
AMCG00008630 mRNA downstream 383970 6819964 ~ 6829699 (-) True AMCG00008630
AMCG00008637 mRNA upstream 40033 7316126 ~ 7337849 (-) True AMCG00008637
AMCG00008638 mRNA upstream 65341 7341434 ~ 7342284 (-) True AMCG00008638
AMCG00008642 mRNA upstream 110959 7387052 ~ 7402820 (-) True AMCG00008642
AMCG00008647 mRNA upstream 158227 7434320 ~ 7517842 (-) True AMCG00008647
AMCG00008646 mRNA upstream 251456 7527549 ~ 7542887 (-) True AMCG00008646
TU63135 other downstream 62197 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 62197 7145625 ~ 7151472 (-) True G50476
TU62870 other downstream 1328219 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 1421085 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 3436315 3774583 ~ 3777354 (-) True AMCG00008547
TU63287 other upstream 625242 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 858488 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 992930 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 994231 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 994231 8270324 ~ 8294354 (-) False G50712

Expression Profile