RNA id: TU63122


Basic Information

Item Value
RNA id TU63122
length 2748
lncRNA type sense_over
GC content 0.34
exon number 4
gene id AMCG00008639
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7296886 ~ 7315850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAACCAAAGACaaactcaacaacaacaacaacattgtccACAAGGTTGAATGTCAATCAATCACAAGGGTAATACTGTTGATATAAGATGTTAATGAAGAACTACTGGTTGACAAGAAACAAGTCTCGTTTTAATTGTACTGTAAACTTCATTACAATTTTTGATTGAAAAAGAATATGAcgtcttttaaaataaaaaaatgcatatcaaTTACAAACGTGGTTGTTAAGTAAGTTGCATGGTGTGCATGGTCCGTGCACAACGTTATCCAGCAGCTGAAGTATGCCGGCGCGCAGGCGCGCAGGCGCGGCTCACTCAGGCGCGGGCAGGTGCTGCGTTACAGGTGGGTAATGCGAGACCGACGACACGTGATTGGTGAAGGAGGAAGTGCAgaactgagaagaaaaaaacagacacaggGGGAAGacacaattctttttttttaaggaatacGCAACAATACAAGTCTTCCATGACCTATATTTTTTAACCGAAGAAGTGGACAGAGCAATCCAAGGActgtgtgacttttttttttttttttaatatgaaacactAACTGAAATGGCTTCCCATTTCATTAAATGtctataataaaaatgaagtcTCAAAAGCTGGCAGCCTTATGCATTATCCTTATCCTTCAGTCACTTCGGACAGCTGGAATGGATACCAATTCAACTACTACACCTGAGactgTCAACATAGCTGCTATTGTGGCCCCCAGTGTTATTGGAGGTCTGGCTGTTATCCTGGCTGTCTTCcttattgttttctgtgtcaTAAGAGGGAAGAGGCAGACAGAAGGCACATATAGGCCAAGCAGCGAAGAACAGACTGGATCACGTGTGGAGACCAATGATGCTCTTAAGCTGCCAAAGGAGGAGCGTCTGATCTAAATGGCCATATGAGGTCCACACAACATTGAAGTCAAGAATGTAGAGCTTGATATCAAATCGGTAACCAAAGCACTAGAGTTCgaaatgaaaactacattttgGCTGTGTCAGTGGATTATAAATATCTGATTTTCTAAACATTGGCTTGTGTGATAAATATCAAGCAGATTGCAAGGGAAATATTGCCACAAGACACTGAGGTTTTGAGGTTTCCCCATCAACCCAAATATGTATCTTCCCAGTTCGGAACGTTTGTGACTCCAGAATCGGAACCTCAAGGTGATCAATTTTCAAACGATATGGAACAGGAgttgttttaaacatgttgaAATGAGAGGTGGTGTTTGGGTTCTACCTTATCCAttattgtgttgcatttaaaacCTCAAAGTTGATACAGTAAATGCATAGAGCATGGGCTTACAAGTTAATTGAATTGCACGTTTCATATTAAAATCTCTCCATTTATAGTGTAATAGAACaaagtaatgtatattttttgttaatgtacgTTTTAACTAATGTCTATTATGCATATTGAAATGGGTGTAAATATGAGATTTCCTCCATCCCAGATCCTTGTGTTTACCTTGAAACCAGtataaactgaaacattttcattgaagTATCAGAGGATGATGCTAtatattaattacttttcaagTTTAGAGTAGCACTTTACTGTAGTCATGTTTAGAGATTTACATCAAACCTGTTATTTActttaacataacatttttttcatagTCGGAAgcaatatgtaattaaattgtacaCAATTAACAAACATCTTAATAAATTTTGATattgtgttttgcttgtttgaCGCAGTGAATGAAATGTGCCTATGTTTAACTGTAACTTACATTCATCtaagaaatgtttgttttgatacatttatccatgacaatatatttgtaatttgacTTAATTGTTGTGTTCTGCTGGACCTTATTTTTTCTAAGGATAAATATCTCCCTTTGTTTAGCTGTGAAATGAAGCAGtgccttttcttattttctgtttaccTTCTAAAAATGTGTTGCTCAAACTGAGTGTCTTTCTATCACACTTAGAGGCCAAGTTAAATAATTTAGTGTATGTAGTGTAAAACTGAATacaacttttttatatatatatatatataaatgttattgttattaaataacAACTCATGAGCCACGAGGCACTGTTTCcacaactcttttttttttatggtgtacaaaacaaaaagtaaaaaatctttaactaaaacaattaaaatgctacaattttaaacaaattgcaTATTCAGCAAAGCCTTCCTTGGAACTTTGCTGGGGTTTATCTGGGCCTGTTAacaaccattttttttattttataaagaactTTAAAGTGGAGACTGCTATGTGGAGTATGGACTACCATGTTTGTGTTAAACTGCCAATCATCTTATCAGTactatgtaaaatgttgtacaaaacaaattcaccagcattttgttaaacaagttttttttttgacatGAAGACCTTTTTTGTATTGGTCTTGTATTGggcattaatacaaataatacacatgatgtatgttttaaatgccTCTAATAAGTTAAAGCTTTTTCTAAGAATAGCTTTTCTTATAAACTAAGGAATACGTCAACTGGTTTCCTTCCATGTAAGAAATTAGATATTTTGTATCAACTACATTACTATTTATAGATGTATACTTACATTTTACTGGCATCCAATCTCATGTtccaatttgcatttttaacaggTGTCTATTACACTTCTAAGTAACTAATTGTTTGAGTCGAATAGTGGATAAATGGAATATCTTATCTCACACATTGTCCTTTTGTTAATCCag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63108 lncRNA upstream 48844 7234764 ~ 7248042 (+) False G50461
TU63109 lncRNA upstream 60133 7233420 ~ 7236753 (+) True G50461
TU63103 lncRNA upstream 74030 7220740 ~ 7222856 (+) True G50459
TU63101 lncRNA upstream 77705 7212746 ~ 7219181 (+) False G50458
TU63177 lncRNA downstream 63227 7379048 ~ 7379506 (+) True G50506
TU63206 lncRNA downstream 217153 7532974 ~ 7542850 (+) True G50534
TU63219 lncRNA downstream 358320 7674141 ~ 7676185 (+) True G50546
TU63235 lncRNA downstream 377115 7692936 ~ 7828902 (+) True G50561
TU63237 lncRNA downstream 423374 7739195 ~ 7740429 (+) True G50563
AMCG00008629 mRNA upstream 548001 6747711 ~ 6748885 (+) True AMCG00008629
AMCG00008626 mRNA upstream 577795 6692745 ~ 6719091 (+) True AMCG00008626
AMCG00008619 mRNA upstream 933856 6305726 ~ 6363030 (+) True AMCG00008619
AMCG00008618 mRNA upstream 1089135 6188494 ~ 6207751 (+) True AMCG00008618
AMCG00008617 mRNA upstream 1177534 6108963 ~ 6119352 (+) True AMCG00008617
AMCG00008641 mRNA downstream 38444 7354265 ~ 7354886 (+) True AMCG00008641
AMCG00008640 mRNA downstream 56207 7372028 ~ 7376143 (+) True AMCG00008640
AMCG00008645 mRNA downstream 99978 7415799 ~ 7416230 (+) True AMCG00008645
AMCG00008643 mRNA downstream 171349 7487170 ~ 7496005 (+) True AMCG00008643
AMCG00008644 mRNA downstream 227899 7543720 ~ 7552782 (+) True AMCG00008644
TU63090 other upstream 278761 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 1554136 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 1700087 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 2724152 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 3131403 4162058 ~ 4165483 (+) True G49982
TU63267 other downstream 618008 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 618008 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 997604 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 1134345 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 1766006 9081827 ~ 9087967 (+) True G50900

Expression Profile