RNA id: AMCG00008646


Basic Information

Item Value
RNA id AMCG00008646
length 526
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00008646
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7527549 ~ 7542887 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTGAGGCTTACAAGCATCGAATCAAGATGGCAGAGGTTGTAGAGCTTCACAAACTTAagATCAAAGGTAATAAGGGGGAACTTGTGAGCAGACTGCAGGCCTACCTGGAGGAACATGCTGAGGAAGAGGTGAACGAAGAGGAGGTTCTTGGGGAAGAGCCAGAGGAGGAAGTGCCCAAAGTGGATGAGCCGACCCCACAGACCCCACCCAAGGATGTAGCCGAAGAGCCAGAGGAAGAAGAAACCGAGAAAAAGGTGGTGAAGATCTCTCCAGCTGCCCCCCTTGATGAGAGGCTGCAGAAGAGAGCCGAGCGCTTTAATGTGCCTGCTACCGCTGAGAGCAAGAAAGCTGCTCGAGCTGCCAGGTTTGGCTTGCCTGTCGTTCCACCAAAAGGGACTTTTCCAGACAGCAAGCCAACTGTCAGTGTTGATGTGCTGAAAAAGAGAGCCCAGAGATTTGGAATGAATGTTTCTTCGGTCTCAAAGAAGAATGGGAACGTCAATGGATTTTTATTAAGGACTTGA

Function

GO: NA

KEGG:

id description
K18732 SARNP, CIP29, THO1; SAP domain-containing ribonucleoprotein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63185 lncRNA downstream 148062 7379038 ~ 7379487 (-) True G50514
TU63163 lncRNA downstream 160619 7366625 ~ 7366930 (-) True G50496
TU63139 lncRNA downstream 601569 6924928 ~ 6925980 (-) True AMCG00008634
TU63079 lncRNA downstream 621972 6905340 ~ 6905577 (-) True G50437
TU63077 lncRNA downstream 623160 6904077 ~ 6904389 (-) True G50435
TU63230 lncRNA upstream 111193 7654080 ~ 7657391 (-) True G50557
TU63231 lncRNA upstream 119265 7662152 ~ 7662442 (-) True G50558
TU63233 lncRNA upstream 125961 7668848 ~ 7676186 (-) True G50560
TU63298 lncRNA upstream 429715 7972602 ~ 7973752 (-) True G50611
TU63303 lncRNA upstream 441853 7984740 ~ 7984951 (-) True G50615
AMCG00008647 mRNA downstream 9707 7434320 ~ 7517842 (-) True AMCG00008647
AMCG00008642 mRNA downstream 124729 7387052 ~ 7402820 (-) True AMCG00008642
AMCG00008638 mRNA downstream 185265 7341434 ~ 7342284 (-) True AMCG00008638
AMCG00008637 mRNA downstream 189700 7316126 ~ 7337849 (-) True AMCG00008637
AMCG00008636 mRNA downstream 251456 7213669 ~ 7276093 (-) True AMCG00008636
AMCG00008650 mRNA upstream 185212 7728099 ~ 7746304 (-) True AMCG00008650
AMCG00008655 mRNA upstream 276264 7819151 ~ 7861536 (-) True AMCG00008655
AMCG00008654 mRNA upstream 494145 8037032 ~ 8075024 (-) True AMCG00008654
AMCG00008658 mRNA upstream 597164 8140051 ~ 8146234 (-) True AMCG00008658
AMCG00008662 mRNA upstream 641564 8184451 ~ 8190177 (-) False AMCG00008662
TU63135 other downstream 376077 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 376077 7145625 ~ 7151472 (-) True G50476
TU62870 other downstream 1642099 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 1734965 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 3750195 3774583 ~ 3777354 (-) True AMCG00008547
TU63287 other upstream 358448 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 591694 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 726136 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 727437 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 727437 8270324 ~ 8294354 (-) False G50712

Expression Profile