RNA id: AMCG00008647


Basic Information

Item Value
RNA id AMCG00008647
length 1146
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00008647
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7434320 ~ 7517842 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTCAGCAAGGCGCTAAAGATGGAGGGCAGCCCATTGTCAGGCTGACACCACGTGAGGGCCAGGGCTGCCAGGGGTCAAGGAATGCTGAGGAGATGAACTTGATGTTGttggggaaggggGTCGAGGAAGATGAGAAACtgaagaagaggaaggagagattTGGGATCCTCACCAGTGCCGCTGCAGGCACGGATGACTCAGAGgcaaagaagaggaagagggcaGAGCGATTTGGAAATTACAATGCTCGAAATTCCTCAATGACTCTGCCAAGCTGCTTTGTGATCCAATCACTGGTGGAGCTTACATTCAGTGATGAAGCACATAAATATCAAGATGGATACCAGAGGTCCATCAGGATCTCGTCACCTTTGGATCACAGGCGCGTGGGGTGGGAGGGGGGCGATGATCCAGTCCCAGCCGAAAGCCTCGAAGTCCACAGTCAACGGGTAACGGCAGCAGCGCGACTCGGTGGAGTGTTCATCGCAGTCCAGGCCCAGGTTCCTCCGGGAGCGTTTCGATGTCTCCAGGACCTTCACTTCCAGGAAGGGTTGCTGGGGAAACATGACAAAACAACCATGTTTGAATTGCCCAGGCGCATTATTTACTTGAAATTCCGAGTCTCTCATCAGGACAAAGAAAAACTCAGGGGGCCGCAGCGAGGTGACAGCAAGGTCATTACCACTCTCATCGAAAGCATTGATGTCGATGCCCCAGTTGGTGTGGGGCTGCTTGAACCAGTTCTGCAGAACATGCTTGAAGTCAATGCTCTGCCAGTGGCCCGAGCGCGAGTTGAGCTCAATCTTGAGAGAACGGATGCGTATGTGGCGGCTGCCCTCTTCAGTGACAGGTTTGAGGCGCAGAATCTGCAGGTAGACAGTGGATGTCTGCTGGAGCGGGCGCAGaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaacatcCAGCAAACATCAATGTCCGGCAGATCAATGACTTCAGGGAAGTTAATACGTCACATGGCCTCCTCGACAACCCATCAGCAATCACATGGCTGCAACCTCCCAACGAATGGGCCGGGGAGGACCGCGGAAGGCAAGGCATTGATGTGCTCTCTTCCTGCTCCTTCCCAAAGATAATGAAggaagAG

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63185 lncRNA downstream 54833 7379038 ~ 7379487 (-) True G50514
TU63163 lncRNA downstream 67390 7366625 ~ 7366930 (-) True G50496
TU63139 lncRNA downstream 508340 6924928 ~ 6925980 (-) True AMCG00008634
TU63079 lncRNA downstream 528743 6905340 ~ 6905577 (-) True G50437
TU63077 lncRNA downstream 529931 6904077 ~ 6904389 (-) True G50435
TU63230 lncRNA upstream 136238 7654080 ~ 7657391 (-) True G50557
TU63231 lncRNA upstream 144310 7662152 ~ 7662442 (-) True G50558
TU63233 lncRNA upstream 151006 7668848 ~ 7676186 (-) True G50560
TU63298 lncRNA upstream 454760 7972602 ~ 7973752 (-) True G50611
TU63303 lncRNA upstream 466898 7984740 ~ 7984951 (-) True G50615
AMCG00008642 mRNA downstream 31500 7387052 ~ 7402820 (-) True AMCG00008642
AMCG00008638 mRNA downstream 92036 7341434 ~ 7342284 (-) True AMCG00008638
AMCG00008637 mRNA downstream 96471 7316126 ~ 7337849 (-) True AMCG00008637
AMCG00008636 mRNA downstream 158227 7213669 ~ 7276093 (-) True AMCG00008636
AMCG00008635 mRNA downstream 424759 6999554 ~ 7009561 (-) True AMCG00008635
AMCG00008646 mRNA upstream 9707 7527549 ~ 7542887 (-) True AMCG00008646
AMCG00008650 mRNA upstream 210257 7728099 ~ 7746304 (-) True AMCG00008650
AMCG00008655 mRNA upstream 301309 7819151 ~ 7861536 (-) True AMCG00008655
AMCG00008654 mRNA upstream 519190 8037032 ~ 8075024 (-) True AMCG00008654
AMCG00008658 mRNA upstream 622209 8140051 ~ 8146234 (-) True AMCG00008658
TU63135 other downstream 282848 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 282848 7145625 ~ 7151472 (-) True G50476
TU62870 other downstream 1548870 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 1641736 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 3656966 3774583 ~ 3777354 (-) True AMCG00008547
TU63287 other upstream 383493 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 616739 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 751181 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 752482 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 752482 8270324 ~ 8294354 (-) False G50712

Expression Profile