RNA id: AMCG00008648


Basic Information

Item Value
RNA id AMCG00008648
length 4554
RNA type mRNA
GC content 0.53
exon number 10
gene id AMCG00008648
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7622630 ~ 7669344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATGATGTCTGAGGAGGCTGAAGAGAGACCGTGCAGTGAGGCCTTTGATCCAGACGAGGGAGATGAAGAGCCGTTTGAGGAGGGCCTGGAGGTAGAGAGCAGCAGGGAGCTGTTGGAGAGGCTgagagagctggagGTGGAGAACTCTGCCCTAGCCCTGGCGAACGAGAGTCAGAGGGAAGCGTACGAGAGGTGTTTGGATGAGGCAATCAGCCAGAATAATCTGCCAACAGAGCCCTTGTTGGAGCATAGCACTGGCCCCGGCCTACTCTCAGACTCCAACAAACCAGAGGAGACCCACACTGAAGCACAGACAAAGGGTAACGGGGAACGTACACGCAATGGCACTCCAGGAACCAGAACTCCGGGCACGTCCATGGAGGCACTCTCTCCTTTCTTCAAGAAGAAAGCACACATTTTGGAGGTGCTGCGGAAGCTGGAGGAGAACGACCCACTGAAATTCCATCCCTCGACAGGGCTCTCCTCCTACCGAGATTTGGGGCAGGTGCTGGCACCCACAGAGTCGATCGTCCCAGGGGAATACCCCCTGCAGCTCAAAGCCCCCGAGACAGATCGGCGCTCCAGTGCAGATTCGGATATCCACGATTACATGAATGGGGAAGGGGCTCTTCCTGAGGACAACGGGCTTGACTATGAGAGTTGTCAGTCTTGCCTAGTGTTCTCACAGAAAAGTCTCGATGGCCTGTTTAAGTGGAAACAGGACAATAGTGTAAGCCTCACCAAAGGGGAAAATGTGAATGGCCTTGATTGCAAAGAAACTGTGGTATCTGTGCCAGACTCCATGACTGCCCAGCTAGCTGTTAGCACAAGCGAACTTTGCACACACAGCACCCCAGCTGAAAAGATGTCGTCGAATTTTCCTTCTGAACCAAGGAATGAGAAACCTAATGACCTTGCACAATTTTTGGGCAATGAAACTTACCTCTTCTCATTAATCAAAGACACTGATCAAAATTGCTCCATGAATGGAGATCCAGAGGAGCCCTTGCCATTAGACGAGGAAATCCATGGTCCCTGTGATGCAAATTTCTGCAACAAGGTCCCTGGTGCTAATCTTCCCTTGCAGTGTCAATCCCTGCAAAGGGAAAATGGTGATCTTACTCCAAAAGAGAATCTGAAGCACACAAAAACTGTGGCCTACCAGAACTTGAGCGCAGGTCAGGTGATTGGCACAGAGGAGCATTACATCAAACTGGAGGCCTACAGCACGACAGAAGCAGTGAACGTGAAAAACAGCTTGTACACCACTACCTCAAATCTGACTATTCCTGGAGTTCCAGACAGGTCTCAAATTGCATACTGTGAGCAAGAATCCACAGAACAGATATGTAATGGTTTGTACTTCTCGAACGAAACCTGCTTTTCCAAAAAAGTTGCCGTGGACTCCTATTTGCCCGTAAACACACTCGAGAAGAACCATGTCTCCGTGCAGCAGCAGGCTCCTCAGGGGAAAGCCAAACTTGCGCTGAGCCCCACCTCCCCTTCTTGCTTAACAGATGCTAAGGCCTCTCCCATCTCTTCCCCCTCAAGACTGCTCAAATTCCTAAAAATACCCTCCATAGGTGAGCGGGCACAAGCGGCCAACCCTCTCCGCCTTAGCCCTCAGCTCACCCGCAGTTCCAAGATCCCCTGCCGGAACAACAACTATGAGGTGTACCACTCACCTGTCACACCCAGAAAAGCTGCCAcagctgagagagacagacaaacgCCTCCCTCCAAGAGTGACTCCTACCCTGCTACACATTCAGCACCTACTTCCCCTCCGAAGCCCGAGGATGCCTTGCCCTTGCAGAAAGAGCCCAGCTACAGTAGCCACTCTGCACCCAAACCCAGCAAGAATGCCAAGCTGACACCTTCAGGGCAACAACACAAAGGCTTTCAAAAGGTGCCCCACTATGAGAATGTGTCCGAACTCTCCACTGGCTGCCAGGCTGATGGATCTGCACAATTCGTTGAAAGGGTGAACCAAACCAAGTTTCCGTCCTATTTGCATGAAGGTCAATCTGAAAAGCAGATTATCTGTCCTGAGGATAAATTAATCAGCCCCATTCACAAACAGTCCCACTTGTCTTGTGGGACTCAGTTGATGCTTTTACCTGACCCATCTTGTGAAACAGCATCCCCTGATCAAGACGCATATTCTGAGAATCCTGGCTGGTACAAACTCCATGATCACCACAGCTTGCCCAACTCCTCGGTCATTCACAAATCTCAAAGCAGCTGCCTCTATTCTAGCACGAAGGACAGGCAGCATGACAGAGGCACTCCAGATGTTGCCCAACAGACCTCTGAATCGACCCAACCTTCTGCTCTTTCTAAGAAAGGCGAGCCTCCCTCCATTCCCAAAAAGCCAGTTAGTGGGAAACCTCCAACTGAATCCAGCCACCTTCCATTTAAAGAACGCTTGGCAGCACTTGGCAAGCTGAAGAGCACCGAAGACTCACCAATTTCTGGTCCGGTTTTGGGGCCCCCCTTAGAAAAGAAAGATGTGCAGTGCAATGGGAAGTTTGCCTCATCAAGCAATAATGAAAGAAGCAAAACTGCAGAAAGGCAAGGGGATCGTAATGGCGTGGATCACAGACACTCAAAATACACAGATTCTCTTGATGGGAAGCCTTACTCCAAAGCCAACCTTGGCAGCTATGGCCTGAAGATCCCAGGTCCTTGCCTACCTTATGAACCTGGAGCCAAATCTTTACCTCCCAACTTTCCAAGCCCCAAAGCAGAGCTGGAGAGTTTCTCTTCCAGAATTTATGTAGCAAAGGCAGATGGCCCAAAGATCAAAGGTGGCTTGCCTTCCTCAAACTCTGATCCACCTCAAGTTTTGCGCAACTACATGAAATGTACAAACACTCAGAGTCCTCCCTATAATGGTAAAACTATTCCAAGCCCCCAGGGCAGCCCCACCAAGGTTCCATCCAAATCTCCTTCTAAACCCAGCCAAGCTTCTTCCAGCGTCAAAGGGCCCAAACCAGCTCAGGAAGATCGTTCCACTTCCCAGAAACATTCTCCAAGAGCAGAGGACAAGAGCAAGCTGCCTGCCAACAGGAAGAAGAACGCTGTTTACTCCGACAGTCTCCCTCCGCCACCACCACGGCCTGATGTCAATGCAGACAAGAGACCCCTTGTGCCAAGTGCTCAATCAGCTATTGAGCAAAAggtcatgaagggcattgaggAGAATATGCTGAAGCTGCAGGAACAGGATCGGGGCCTGGGGGCTGAGGTCAAACAAAAGGCTTCCAATGGCATTGCCAGCTGGTTTGGCCTGAAGAAAAGCAAGCTGCCAGCTCTCAACCGTAAACCAGACATGGTCAAACTCAAAGAGGACAAGAAGGAGTGGAAGCTCAACATGTCCTCCATGGGTAAAGATCCTAAAACAGCCACAAAGAAGAAGCTAGAAGTAGAGAGCTTAAATATCTCCAAATTGATGGAGAAGGCTGAGGATTTGCGCAGGGCCCTGGAGGAGGAGCGGGCCTATGTCAATGGAGTGGCCCTAGATAGGCCCAGCCGGGGCCACTCCTGTGAGGTGGTGATGGATCAGAGTCAAAGTCAGCTCTCAGTCATGTACAGGGAGtccttgtttttctccaggGTGGATGAGAGGGACACCAGCAGTAATGGTCTGGCTCACCGGCGCCTGTCCTTTGACTCCAAGAAGTCCAGGCCTGTTTTCTGCTCCCCAAGGAATGGCATCATCAGCCATGGCAAGAGCAGAGAGGAAGTGGAGAAGGCTACAGAACTCATCAGCAAAGATGACATCACATCGGTTGAGAGTCTAGCCGAGTCTGTAAACTCCCAGCACTTTGCAGGGTCCGGCTCCTCAACCAGGACACTCGACAGTGGGATCGGCACATTTCCTCTTCCTGACTACGCTGGCAGCGCCTCAGGGAAAAGCATCCCCAAGGTGAGGCCCCGGGGGGAATATGAATGCTGTGCCGCCCTGGGGAAACCCAGCCCAGGGACAAAGGTTCCGCGCAAAGCCAGGACTCTGGAGAGGGAGCTATCCTCGCTGGAGGAGGCATTTTCCAGGGACAAGGAGCTGAGTCCTGGGCTTTACAGCTCTCCTCTGGAGGGCAGGGGCTCCAGTACACACATCTCCGGCACCATCCATGAAGATGTGGATCCCTACAGAGCTCACGTTCGATCTCCTTCATCCAAGAACTGGACCTTCCCCAATCTGAAAGCTTCTAGTGGGTCAACCGAGGTGTACCTGGGAGTCCGAGGAGAAGTGGAACCAGCCAGCCACGGGACTCCGTTCAGAAGGagtttgaAGCCTTGCCTCCCGCCTCCTTCCCGAGATGCTGACCCCGCCAGCTTGCCCCTGCCTCCCCCACTGGCCTTGGTCCGCCGGGTGAAGTCTCGGACCCCCAGCGCCCCTGAGGTGGGCAAAGAAGGAGGTCTTGAGCTGGTGAAGGAGCGCCCCGATGACGTTCTGTCCCCCAGCCGCCCCTCAGCCCTCGAGACCCCCGAGTCTCTCAGCGACTCGCTGTACGACAGCCTGTCCTCTTGTGGCAGCCAAGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63206 lncRNA upstream 79780 7532974 ~ 7542850 (+) True G50534
TU63177 lncRNA upstream 243124 7379048 ~ 7379506 (+) True G50506
TU63121 lncRNA upstream 306809 7296886 ~ 7315821 (+) True AMCG00008639
TU63219 lncRNA downstream 4797 7674141 ~ 7676185 (+) True G50546
TU63235 lncRNA downstream 23592 7692936 ~ 7828902 (+) True G50561
TU63237 lncRNA downstream 69851 7739195 ~ 7740429 (+) True G50563
TU63252 lncRNA downstream 155539 7824883 ~ 7826540 (+) True G50571
TU63261 lncRNA downstream 227509 7896853 ~ 7900191 (+) True G50579
AMCG00008644 mRNA upstream 69848 7543720 ~ 7552782 (+) True AMCG00008644
AMCG00008643 mRNA upstream 126625 7487170 ~ 7496005 (+) True AMCG00008643
AMCG00008645 mRNA upstream 206400 7415799 ~ 7416230 (+) True AMCG00008645
AMCG00008640 mRNA upstream 246487 7372028 ~ 7376143 (+) True AMCG00008640
AMCG00008641 mRNA upstream 267744 7354265 ~ 7354886 (+) True AMCG00008641
AMCG00008649 mRNA downstream 52897 7722241 ~ 7725184 (+) True AMCG00008649
AMCG00008651 mRNA downstream 114264 7783608 ~ 7819242 (+) True AMCG00008651
AMCG00008652 mRNA downstream 332252 8001596 ~ 8016744 (+) True AMCG00008652
AMCG00008653 mRNA downstream 352324 8021668 ~ 8036234 (+) True AMCG00008653
AMCG00008657 mRNA downstream 431251 8100595 ~ 8101654 (+) True AMCG00008657
TU63090 other upstream 604505 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 1879880 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 2025831 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 3049896 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 3457147 4162058 ~ 4165483 (+) True G49982
TU63267 other downstream 264485 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 264485 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 644081 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 780822 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 1412483 9081827 ~ 9087967 (+) True G50900

Expression Profile