RNA id: AMCG00008654


Basic Information

Item Value
RNA id AMCG00008654
length 5228
RNA type mRNA
GC content 0.47
exon number 13
gene id AMCG00008654
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8037032 ~ 8075024 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCAATCCACGACACCCCTCTTTAATATGAATCTATAGAAATTATATCGGTGCAATATGCACCctatatttcaatgttttttttatgctttgGAGTTTAAGGTCACTTAAAAATAAGaagcCAGTGTTCTAAGCTTGTAAGGAGGATGTGTTCATCCCTGCAGAGGTCTGTGGCGCCTTGCGCTTGACTTCAGACTCTCTTCCTTTCCAAGTTCCCTGGGTTTGTAATGTGAGCTGTTGCTGCATTGTGAGGGGGAGACACCAGAGATTGACGGATACagagaaggaaagaggagcaGGCGGTACTAGACTGTCTAGGGAAGACTGGAGCGACATTAAAAGCAAGTTTGTGAACGAGACTGAAAGGACATATTTCCCCCCCCCTTTTACCTTTCGAACAAAAGCTGAGCAGATCCTCCATTCCCAGTCCTACGATACACTACATCCACTTAAACTGTAGCCCTCTGAGAGACCTTGTTTGGACTTTACCAGCTTTTCTCCTTCATTGTATAATTTTCAACTATCTAGTCCGTATTTGGGATTTCAAGATGGCCAAGAGAAACAGTCACAAAGATACGGCTGGAGTAGTGTTTGACACTCATTCCAAGATGGTGATGTCACAGGGAGGAACCTTTGAAAAGATGAAGGAAAAGATCAGTGCTGTGCGAGCTGTCGTTCCCAACAAGAGCAACAACGAGATCGTTCTGGTGCTCCAGCACTTTGAGAATTCGGTGGACCGCACTGTGCAGGCCTTTGTGGAAGGTAGTGCTACAGAAATCTTAAAGGAGTGGAATGTAACGGGGAAAAAGAAGcccaagaagaagaagaagcccAAGCCACAGCCTGAGAGTGGGAATGGGCAGGTTGAAGCAGAGCTGGCAGATCCCTCGCAGCCCCCTGCTGCCCCCAACAAAGATGGCCTAAATGGCTTTCACGCCAATGGCTCTGTGCTGGACGGTGACTCAGTGGACTCCCTCAGTGAACAGCTGGACTCTGTATCTCTGGACACGGCCGAGCTGGACTCGGAGCCCGCAATGGCAGAGCTCTCGGACACTACAGGAACAGAAGCAGAAGACGGCAAACCCAAAACTGACCTGCAGAGCCAGGCAGTGCTTCAGGCCCATGTTCCCCGGTCCCACCAGATCCCCAGAGGCCCTGGTGGCCCTGGTGCCAAGCCCCGCCCCCGCGCCGGCTCCAGCTCCCAGCAGACCGCCACACTCTCGCTGCTCATCCCTGAGGGCTCGGCTTCCAACAAGAAGATTGCTTCCAACATCGACAAATCTGTGAAGGACCTGCAGCGCTGTACGGCCTCGCTCACCCGCTACAGGGTGGTGGTGAAGGAGGAGATGGACTCCTCCATCAAGAAAATGAAGCAGACCTTCGCTGAGCTGCAAAGCTGTTTAATGGACCGTGAGGTGGCCCTGTTGGCGGAAATGGACAAAGTCAAAGCAGAAGCCATGGCAATCCTGGACGGCCGGCAGAAGAAAGCAGAGGAGTTGCGGCGGTTGACTGACCAGGCGGCGGCCATGTCTGAGGAGCAGCTGAGCGAACTGCGCGCAGACATCAAGCACTTTGTGAGTGAGCGCAAGTATGACGAGGATCTGGGAAGAGCTGTCAAGTTCACCTATGAGCTGGAACCTGCCAAGAAGAACATCATGAGTTTTGGCCATGTGTATCATCCTCAGACGGGCTACTCCAGCCGCTCTCGTTGCAGCTCCGCTTCCTCCTCCCTCACCAGCCCCGGGACCCCCGAGGGCCCCCCGCCCCCTCTTCCCCAGGCCTCAGGATACAGCCCCCGGGATGCTGCTGCTCGACCCACACAGCCCCACAGACAGGGCTACCAAGGAAATCGCAGGCCGGGTCAAGGCTACCAGCCTGGAGGTCAAAGATCGAATGGAGCCTACTACCAGGACCGAAACCCCGTCCGGACCAGCAATCGCTACCCCACCAACCGCAGCCAGGGGGTGGCCCCGGCCGCTGCCCCTGCCCCACCTTCCGCCAATGGCTCCACCCAGCACCCTCGCCCCACTCCCAATGGGCTGCCCCAACGCCCACCCCGGACTCACTGCCCCTGACACAGCCCACCCATCCCCCTTCTCCCCAGAACCACCCCCACCACCTTCCCCCACATTACGTCCCCCCCTGGACAGCACCTCTACCTATTGAAGATGTAGAAATCGTTTACATCCTTTGAGCTGTAGTGCCACCCAAGGTCCTGTCATTCTGCCATCCAAATTGCTATCCtgccccttctctccctctgtcctctGCCCATTCTTGCCAGTCTTCTGTTGCTCTATCAGATGCCTTTGTCTGCTGCTTTTACTTGTGCTTCCCACTAGTACAGGTTGTCAGTCATAATTGCTCATACCATACAAGGCTTCCCATGGGTTGTATAGGTGTTTTGTTAGTGGAATGAGTTGTTATCCAGTGTGGGTACTTGGTAATGGAATGGAGTACAAACTTGTAGTAGTTCTGGGGTATGAACTCTTAGATGCACACTTTGTGGCTAATCTTGAACCATTTagttcaattttattttgatttttacttCTAAGTTTTGAGCATTGCCTAAATTTATTCCTATTTGCCTCCTACAAATGGCACAACATGCCAGACTTTCTACGATAAGGTTATTGCTGGTCTTGGGTGATGGCAAACTGCAACCTTTGAGTCCCTGTTAAGCTTGTGCTTCTGTGGAGATGAGCTTTGGCAGTTAGTCTGAACGATTTCTGATGTTCTTAAACCATCAGTCCAGAGGCATTTGGAGGCTTCTTAAACCCttcttcagtgtttgtttggttAAATGACTGATTTAGGCTCCACTAATGCGAGAGCATGTTGAGTTTGTCGAAATACCTGGTGTATTTCACAAACGTATGAGCTTGTGTGCATTGTATCTGGAGTTTGCCATCTCAAAATTGTTGACCTAGACTTTAGCTGTAGCTCAGAGTTGTGCATTTTGGCTCGGCTCCAAATCTTTTCATGTGCCTGGAAGGAGTTCGTAGAGTCCTGTTCTTGGTTAATTACTTGATTTGTCCTAATAGAGAATCGATTTTTATTATATAGAATTcgttttttggttttgatttaaatatacttaGTAAGTAGGTGCCACCCTCCTCCGTCACAAACTTTTCTGTAAAAGTCTGTCCCAGTTcttgtacagaaaaaaataatactaaaaacaaaatttaaaaaaaataaataaataaaatatggatgGGGCGAAATATTCAGAACTGGGGAAGGTTGATTTGTAAAGGTTGTACACTTTATTTAGCATGCCTTCAATGCAGGGCTTTATTGCATTATAGACTGAACTTTACCTCATTATAGATGTCTGTTTACACTGCATGGATGTCGAAAGTTTTGGTTCTGGTTTGTTCACAAAACGAAAGTcttattgcattgcattgcattgcattgcattgcattgcatttttaagcGATCAAAAATGTAATGGGAAAAGTAAGCAGGCAGAAGTTAATGTATTGTGAATTGATGTATAgatcaattttctttttctattcaTTTACTTGAATAACTAAATGCAGATTTTCCAGCTTATAGAATGTAGCAGCTTCTGTTGGCCTAGGATTCAGGTGAACCAtcacacttttatatatatataaatgtatataaaggGCAACTGCAAAACTATTTGATCCATCTACAATTCAGTAATTGATAAACCCAGTTTTGCAAGTGTAGTTTTCCAGCTTGCATCACCTAATTGGTTGGAGAGGAGCAGACCTAAGATCTGCCCTACACTTTGTCCCTAAAGGGCATAAAGTGAATAATGGGGTAATGTTTCTCTACTGTACATTGTTAAAGCTAGGAGGTGTCTTAATACTTTGTGAACCTGCTGGTTTCAGACGAGTTCTGTgatttttcctctctctccatgttGCTTGAGCTCTAGTTGCGAGTGTCGAGCGCTGAATTCCATCTGAGGGCTTgacattttgtcttttattgcCAGAGCTGGGTGATTCCCATTATTGACCCTGTGATCTGCCACATGGGATGCGTTCCTAAGCAATATCAAATGTAAGGTAATAAAAGCTGAGGCAGTTTTGTTCTTCAAATGCCTTCCTTCAGTGAGACATTTGCACAATTGTTGCCTCACTGCCTCTAATCTTAGTCTGGGCTCCATTTGCCAATAGCCTTAGCTTCACTTCCACGCTGCCTCTGGCACGTCAGAATCAATTTTTTCTAGTCGCCGTCCATCTCTGCGTGTGCTTATGAGTCTGGACTGTAAGCTGTTATGCAAACTTTGAATCTCTGCTCtttgtccccccacccccccctcccttctctGAATCAGCTGATACCATACAACCACACCTGGAATGCTTTAAACAGTGTGCACATTGTGGATGGCGAAAGCTAGTCAGATTTGACTTTGGTCTCATGTATTTCATAGCTCGGTGTCCAGAGCCTCGCTGGCGTTACAGCCTGACTCACAGTGGCTGACTCTTGCTAGCTACtggtgtttcagtgctgtacgctgtctgtgcttttttgtcatttgtttttgtttgttaatttccAAAGAATATTGTTGAAAAGCATTCAAACTTGCAGGCCACTGCCATTCTTTCAAGTACTGTATCAGACCGTTGTTGAATCTGTGCTCTTAAGaaacctgctctctctctctctctctcacacaaggTCAGTATCGCCCCTTGGTTGCTGCTAATACTTTTAGGGGGATTCCAATTACACAGCAGTCCAGAGCCCTCAGATGGGTGGCGTGCGATTCATGTCTGCAAATACACACGACTGGATATTGTACAGTTTGTCATTATTAATAACCTTGAACATTTCAAGTCAGCATTACTTTGCTTCCCTAATTCAGAGTTCACTGACACCGCTTGCGGGTCTCTTGCCTTTTTGTCTGTCAATATGAATGCAGATGGCCTTGTTCTGAAATAAGTCTGCAACACCTGATTGTCCCGGCTCCCAATTGCAGCATTTGATGCTtctaggatttattttttattttttattccacttTAATTTCTTTCCTTCTATGCATCAGAGACTGCTCTAAAACTAGAAGTGCCTTCTGTCGTCTCCCTAGATCCTGCCATCCGTCCCCCCTTTCTTTCCCCTCCAACTATGGACCAAAGACAACCCCTCTCCTCTTCAGTGTAGGCCCCAGTAGACCAGCACTGGACACCATGCCCTTCACAGACCAGAGTGGCCATGCTCTCCT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko04141 Protein processing in endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63303 lncRNA downstream 52081 7984740 ~ 7984951 (-) True G50615
TU63298 lncRNA downstream 63280 7972602 ~ 7973752 (-) True G50611
TU63233 lncRNA downstream 360846 7668848 ~ 7676186 (-) True G50560
TU63231 lncRNA downstream 374590 7662152 ~ 7662442 (-) True G50558
TU63230 lncRNA downstream 379641 7654080 ~ 7657391 (-) True G50557
TU63340 lncRNA upstream 23748 8098772 ~ 8099445 (-) True G50646
TU63341 lncRNA upstream 30348 8105372 ~ 8105602 (-) True G50647
TU63355 lncRNA upstream 62451 8137475 ~ 8138061 (-) True G50657
TU63371 lncRNA upstream 107905 8182929 ~ 8185121 (-) True AMCG00008662
TU63426 lncRNA upstream 203728 8278752 ~ 8290801 (-) False G50711
AMCG00008655 mRNA downstream 175496 7819151 ~ 7861536 (-) True AMCG00008655
AMCG00008650 mRNA downstream 290728 7728099 ~ 7746304 (-) True AMCG00008650
AMCG00008646 mRNA downstream 494145 7527549 ~ 7542887 (-) True AMCG00008646
AMCG00008647 mRNA downstream 519190 7434320 ~ 7517842 (-) True AMCG00008647
AMCG00008642 mRNA downstream 634212 7387052 ~ 7402820 (-) True AMCG00008642
AMCG00008658 mRNA upstream 65027 8140051 ~ 8146234 (-) True AMCG00008658
AMCG00008662 mRNA upstream 109427 8184451 ~ 8190177 (-) False AMCG00008662
AMCG00008660 mRNA upstream 117228 8192252 ~ 8207177 (-) True AMCG00008660
AMCG00008659 mRNA upstream 156655 8231679 ~ 8244280 (-) True AMCG00008659
AMCG00008661 mRNA upstream 176830 8251854 ~ 8273688 (-) True AMCG00008661
TU63287 other downstream 134426 7901335 ~ 7902606 (-) True G50602
TU63135 other downstream 885560 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 885560 7145625 ~ 7151472 (-) True G50476
TU62870 other downstream 2151582 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 2244448 5787750 ~ 5792584 (-) False AMCG00008608
TU63350 other upstream 59557 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 193999 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 195300 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 195300 8270324 ~ 8294354 (-) False G50712
TU63430 other upstream 216775 8291799 ~ 8294354 (-) False G50712

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000155_00008951_00010994.mRNA True 1728 mRNA 0.50 6 CI01000155 7969 ~ 10994 (-)