RNA id: AMCG00008655


Basic Information

Item Value
RNA id AMCG00008655
length 2586
RNA type mRNA
GC content 0.55
exon number 25
gene id AMCG00008655
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7819151 ~ 7861536 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTATAGCTGTGGAGCAGGGTTCTCCAAGCGTGGTCTTTAGAGGCCTCCAGTGCAATGCCCCCTCCTGGAATGCCCCCCCCATTCCCACCAATGGGTGTTTCACCGATGGGACAGCGAGCTTCTGCTCTGCCCCCTATACCCCCGGGCATGATGCCCCCTATGATGCCCCCCATGAGTGGGCCCCCTCCTATGGCACAGATACCAGGCATGATGCCACCCTTGATGCCTGGGATGATAATGCCAGGCCTGCCCTCAGGACCGGTCACTGTTACAGCGCCACATCTGCTCCTCAGACAACTCCAATTGCCAGCCCCACAGTGAGTGCCCTTCAGCAGACAGCAGGCCCTGAACCCCCATCCACCCAAGAGCAGACAGGAAAGAAATCATCCTGGACTGAACACAAGGCCCCAGATGGGCGAACGTATTTCTACAACTCCGAGAGCAAGCAGTCCACCTGGGAGAAACCAGATGAATTGAAATCCAAAGCAGAGCTCCTTCTCTCTCAGAGCCCATGGAAAGAGTACAAGTCTGACACAGGCAAGCCCTACTACTATAACTCTCAGAGCAAAGAGTCTCGCTGGACCAAACCCAAAGAACTGGAGGAGCTCGAAGCAATGATAAAAGAAGAGGAAGCAGCTGGGAAGACACACGAGTTGATGGATGCTGGGATTGGTTCGGGGGGTGTCCATGTAGTGGATGCCCTAGTAGAGCCAGACTCCACCCCCTCGGAGGAACAGGACCCCCTTGGTGAAGTGACCCCCATCAATCCTGCAGCAGAACTGCCTGAACAGGCGACTGAGGAAATGACAATAGCCCAGCCAGAACCAGCCAGTGAGCTGACTTGGATGGAGGAGGAGAGCCGGAGAAGCTCGGAGAAGAAGACCTACAGCTGGAGCACTAAGGAGGAAGCTAAGCAGGCCTTCAAAGAGCTGCTGAAGGACAAGGGGGTGCTCTCCAATGCTTCCTGGGAACAAGCTATGAAGACCATCATCAATGATCCCAGATACAGTGCCCTGCCCAAGCTGAGTGAGAAGAAGCAGGCCTTTAACGCTTACAAGGCtcagagggagaaggaggaaaaGGAGGAGGCGAGGCTGAGGGCCAAAGAGGCCAAGGAGACCCTGCAGAGATTCCTGGAGCAGCACAGTAAGATGAGCTCAACAACACGctacagAAAAGCTGAGCAGATGTTTGGGGAACTGGAGGTGTGGTCTATCGTCCCAGAGAGAGATCGCAAAGAAATCTATGATGATGTTCTGTTCTTCCTCGCGAGGAAGGAGAAGGAGGAGGCCAAACAGCTGCGTAAGAGGAACATCCAAGAGCTGAAAAACATCCTCGACAACATGGCCAGTGTCACCTACCAGACCAGCTGGTCTGAGGCCCAGCAGCACCTTCTGGACAACCCCACCTTCTTTGAAGACCAGGATCTGCAGAACATGGACAAAGAGGACGCTCTGATCTGCTTCGAGGAGCACATCCGGgccctggagaaggaggaggaggaagacaagGAAAAGAGCCGGCTGAGAGACAGACGCCAGCAGCGCAAGAACAGGGAGGCTTTCCAGGCTTTCCTGGATGAGCTACATGACACTGGCCAACTGCACTCCATGTCTACCTGGATGGAGCTCTATCCCTCCGTGAGCTCTGATTCACGCTTTGCCAATATGCTGGGACAGCCAGGGTTAGTAGGGGATGGGGACAGGAGTTTTGCAGTGGAGGTCCGCACCACCTTTGAGGATTTTGCTCACATTATCAGTTTCGATAAGCGGGCAGCCACCCTGGACGCGGGCAACATCAAACTGACCTTCAACAGTTTGCTGGAGAAGGCAGAGGCccgggagaaggagagagagaaggaagaggCTCGGAAGCTGCGGAGAAAGGAGGCTGCTTTCAGGAGCATGCTGAAGCAAGCCACCCCGGCCCTGGAGCCACAGGCCAACTGGGAGGACGTTCGAGAGCGTTTCCTAACCGACTCGGCCTTCGCCCAGATAACTCTGGAGTCCGAGCGCATCCGGCTCTTCAAGGAGTTCATCGCTGTGCTGGAGAATGAGTGCCAGCACTACCACTCCAAGAGCAAGAAACACTCTAAGAAGTCCAAGAAGCACCATCGCAAGAGGTCCCACTCCCAATCAGGCTCAGATTCGGAGGATGAGGACCATCACCACCGCTcccagaagaagaagaagcggACTCACTCGGAGTCCCAGACAGACAGGTCCTCCTCACCGGAGTCAGATCACAGTTCTAAAAAATccaaaaagcagaagaaaaagagTAAGAAGAGACGGCGGAAATCTAACACACCTGAGAGCGAGGGAGAgccagagaaagagaagagCAGGAAGGAGCGAGAGAAGGACAAGGGGCGAGAGGGCGAGAGAGACGAGGAGAAGGAGCGGGAGCGAGAGAGCGGGCGAGCGGACGGGCGGCGTAAATCTCCCAAATACACAGGCAAGAAGGAGAAGTCTTCCCCACCCGCTGCGGATCACCGCATCGGCACGAAGGAAGGGCTGGTTTCGAAGATCTGTGGTAGGAAGAGCGGGGGGCAGGAAGGAGGAGGTTACGGCATGACAATG

Function

GO: NA

KEGG:

id description
K12821 PRPF40, PRP40; pre-mRNA-processing factor 40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63233 lncRNA downstream 142965 7668848 ~ 7676186 (-) True G50560
TU63231 lncRNA downstream 156709 7662152 ~ 7662442 (-) True G50558
TU63230 lncRNA downstream 161760 7654080 ~ 7657391 (-) True G50557
TU63185 lncRNA downstream 439664 7379038 ~ 7379487 (-) True G50514
TU63163 lncRNA downstream 452221 7366625 ~ 7366930 (-) True G50496
TU63298 lncRNA upstream 111066 7972602 ~ 7973752 (-) True G50611
TU63303 lncRNA upstream 123204 7984740 ~ 7984951 (-) True G50615
TU63323 lncRNA upstream 144102 8005638 ~ 8104803 (-) True G50632
TU63340 lncRNA upstream 237236 8098772 ~ 8099445 (-) True G50646
TU63341 lncRNA upstream 243836 8105372 ~ 8105602 (-) True G50647
AMCG00008650 mRNA downstream 72847 7728099 ~ 7746304 (-) True AMCG00008650
AMCG00008646 mRNA downstream 276264 7527549 ~ 7542887 (-) True AMCG00008646
AMCG00008647 mRNA downstream 301309 7434320 ~ 7517842 (-) True AMCG00008647
AMCG00008642 mRNA downstream 416331 7387052 ~ 7402820 (-) True AMCG00008642
AMCG00008638 mRNA downstream 476867 7341434 ~ 7342284 (-) True AMCG00008638
AMCG00008654 mRNA upstream 175496 8037032 ~ 8075024 (-) True AMCG00008654
AMCG00008658 mRNA upstream 278515 8140051 ~ 8146234 (-) True AMCG00008658
AMCG00008662 mRNA upstream 322915 8184451 ~ 8190177 (-) False AMCG00008662
AMCG00008660 mRNA upstream 330716 8192252 ~ 8207177 (-) True AMCG00008660
AMCG00008659 mRNA upstream 370143 8231679 ~ 8244280 (-) True AMCG00008659
TU63135 other downstream 667679 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 667679 7145625 ~ 7151472 (-) True G50476
TU62870 other downstream 1933701 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 2026567 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 4041797 3774583 ~ 3777354 (-) True AMCG00008547
TU63287 other upstream 39799 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 273045 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 407487 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 408788 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 408788 8270324 ~ 8294354 (-) False G50712

Expression Profile