RNA id: AMCG00008656


Basic Information

Item Value
RNA id AMCG00008656
length 3760
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00008656
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8125999 ~ 8138061 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTGTTCCAGTGCCCGTGGACAGCACCGCGTCTGTCTGCACGGCTGCCGGCGATGCGGCCCCTGAGCCCGGCCGCGCTGCTGTGTGCGCTCGCTGCGTGTGCGCTGTGCTCCGTGCTGGAGCGCCGGGAGGCCCACACTGAAGCCACGgcCTATCTGAAGAAGTACGGGTACCTCCACACCCCCCTGGACCTGGAGTCTCAGGGTTACGATCCCGAAGAGGTTAAGGAGGCTCTCAAGACCTTTCAGAGGGTGACCGAGCTGCCTGTCACAGGAAAAATAGACAAATCCACTCTGTCAAAGATGAGACAGCCGCGCTGCGGGATCGAGGACCCCTTTAACCAAAAGACCTTCAAATACCTCCGGCTGGGGCAGTGGGCCAAGAAGGACCTGACCTATCGCATCTACAACTACACCCCCGACATGGGATTAGCCAAGACCCGCAGTGCTATCCAGTCGGCTTTCAAGTACTGGAGCGATGTGGCGCCGCTCAGCTTTCGGGAGGTGCAAGCGGGAAGGGCCGATATCAAGATCTCATTCCACAAGAGGGGCCACACCTGTGCTGTGGCCTTCGACGGGCCTGGGCGGGTGCTTGCTCACGCTGACATCCCAGAGTCAGGGATTGTCCACTTTGATGAAGACGAGTGGTGGACGGAGGGCACAAGCCGTGGAGTCAACCTGCGCATCATTGCAGCCCACGAGATCGGCCATGCACTGGGGCTGGGCCACTCGCAGTATTCCCGGGCCCTCATGGGCCCCGTCTACACTGGCTATAGAAATCCCTTCACGCTGCACGCTGACGATGTTCGCGGCATCCAGGCTCTGTACGGTAAGGGCCCCAAAGCCTGCATCGGCATCACTGTGTCCGATTCTGCTAgcaaacgtGGGGACAAGCCCGACCCCTGCACTGCCAACCTAGATGCCATCATGCTAGGCCCCTTCAGGAAGACCTTTGCGTTCAGTGGAAAGTACGTGTGGACGATTTCTGACATGGGACACAACCAACTCATCAAGATCAACCTCCTGTGGAAGGAACTCCCAGGGAACATCAACACAGCTGTTCACTCGCAGAAAACCAACAAGACCTATTTCCTGAAagGTAACAAGGTGTGGAGGTACACCGGTTTCAAACTGGATTATGGCTACCCCAAACCACTCACCCGCATCCCGCCGAACATCGACGCTGCCCTGTACCTAGAGAAGAACCAGAAGATTATCTTCTTCAAGgggGACGGTTACTGGCAGTGGGATGAGCTGGTGTACAATGACCTTAGCATCTACCCTAAGCCCATCTCTCACCTCTTCACCGGGATACCCCCCAACCCAGATGCCGCCTTCACATGGACCAATGGCAAGATTTACTTCTTCAAAGGTGACCAGTACTGGCGTGTCAACAGCCAATTCACTGCTGACAAAGGCTACCCACAGAGCAAGAGGGAGCGCTGGATGCAGTGCCATAAGTAGACAGCAAGGGGGCATTGGGGAGCAGGGCTGGGAATGTGGGGGCAAGGAAGGGGTGGATCAGTCTGGCCAGATAAACCACTTGGACCAAGAATACAAAGCTAAGCCTAAGGCCAAGTCTATTCCAGGACAAGGTGATTTTAAGCAAAGGTTTGAGAAAAGCCAACCTTTTTTTGACTACTTTCTTTAAGCACATAGTTATGTTTGTTcagctttttaatttcagtaaacAGGCAGAATGTTTATGAGGAAGTAGTATTGAAAATGGTCCAAGGGCAATCAAAGGTTAGTCCCCTGTGATCTAAAATAGCATCTTATACTTTCAATTTcagtatataattaaaaaaaccaATCCATTCCAGAGTGTAGAGAAACAGGACCACAGTTTATCCCTTCATTGCCAGAGATTTTCCTCTTCCACAGTAGCCAGTGTGTTACCATTGCTAGGGCTTTTGCTATGATTATATGgtccagacagagagaggaagggagagagacaccAACTGCTCCAGATCTTCTTCCCTCAAACATCTAACTTCCAACTGTGCCATTTCACTGCAAACTTTTCTGATGTTATTCTGAAATGCTCTGGCCAAAAAAGTGCTTTACCCCCAGCCCCAAGCCTCTGTCTCAAAACAAATGGTGACCCAAACAAATCCAGTTAGCCCAGccccacattttatttgtgaaaactATAATGTTATGTAAACTATGAATTACTCTCTCTGGACCTGACTGTCCATTTAAGGTCAATCAAACTGTGCAAacaatgcaacaacaacaataacaatgcaGCCTCCCCCCCACTCTTGAGAAATAGAATGCATACATAGATATTGTTAATGCAAACTGACTGAGAGCCAAACCAAAGCCTTTACATGTGAGTGAATAAATAGCCCACATTTTACTAACTATATCACTAATGAGAACAGAATAACGCAGTTTCCCACATCGATTTAAACAAGTTAACAATCAAGGTATTCATTCCTAAGCCAATCAAATTCTGAAACGTCAACATACTGCCACACAGTGGTACAATGAGGTATCGTTGGGAACTTTTTgaacattaacatatttaccAGGGATGGGTATTTTGTAGCATTTTATCATTTGGCGAGTGTAAACAACGTACTCGAGCACTGGGACCTAATATGCATTATCCTGCATACGCTTCACAAACATTAGCAGCACAAGTCGTATTGTTAAATTCCAGTGCATGTCCCTGGCTTGATTCTGCTGCGTTACGAGTacaagtttgtttatttttatttgctagCAGATTGCTCTCTACAAACTAACCGTCAACTAAACCTAGGCctatcaataaattaatacattttaaaataatttatcttGACGTTTTCTATATTTCAGTGTTTATCTTTTACAAAATGATAGTTTCAGAGTTAGAAAAGCAAAGCACATGATCTGAACTATTTTGCATACCAGCCTACCCAGCGTTAATCATTTACAAGgaattattattgaaaaatcATGTACCTCACATTGAAcaagatgtattatttatgttatttttgaaattgaatgCACAAGTAATTCCAGTTTTAAGTTTGGGAACCCTAGTatttacacacaatacaaacttGGAAATAACATTGTATGTGGATTGCGGTTTGTTACATTTCGAGCTCTGCTCAGAAGAGGATGAGGTATTTATAGCTAGATACTGCCCATACTTTAAACATGTCTGTTGTATACCAGCACTACTATTGTGTAACCACTGACTAGAGTAACATTGTGACTCACCTCCTTCATAAGGACTTTGCCAGTATTTTCTATTGCTCCGGTTTAAACTAAGGGTATACGcttcttgtggttttgaaaCGTTTGCTACCATCAGCTGATGTTTTAAAGCTTTAGTAGTCAGACGTTTGTGCTAGGATTCACCGTTCTGTTCTGAggatatttttcattaaataaattaaggttATTAGGTCCTTAACTAaagcatgtttttgtattttgtgttattcttATAAAAGGCCATCTGGTATGGAGTCTTCCACATATTCAGGGTCATCAACTgtagtttatttgtgtgtgcgtttgtttttcaaatcaaatgtaaatttcTCAACTCATGACTTGCCTGGAAGTggacttaaaatgtaaatgaacacaAATCTATAGGTGATGTCCTTGCAAACGATTTATGTCACTAGCGAAGGGCGATGACTATCGCTCGCACTGCCGCAGTTACTGGATAACTGCTTTATCATTATAAAATGATTAGTATCAGAGTTGTACgtttttcataaaataacaataaataataccaa

Function

GO: NA

KEGG:

id description
K07998 MMP19, MMP18; matrix metalloproteinase-19 (RASI)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63317 lncRNA upstream 50995 8068760 ~ 8075004 (+) True G50627
TU63305 lncRNA upstream 129938 7995755 ~ 7996061 (+) True G50617
TU63304 lncRNA upstream 135282 7990425 ~ 7990717 (+) True G50616
TU63261 lncRNA upstream 225808 7896853 ~ 7900191 (+) True G50579
TU63252 lncRNA upstream 299459 7824883 ~ 7826540 (+) True G50571
TU63372 lncRNA downstream 51764 8189825 ~ 8190785 (+) True G50668
TU63396 lncRNA downstream 108516 8246577 ~ 8246832 (+) True G50692
TU63402 lncRNA downstream 130946 8269007 ~ 8269326 (+) True G50698
TU63420 lncRNA downstream 140792 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA downstream 140792 8278853 ~ 8290801 (+) False AMCG00008664
AMCG00008657 mRNA upstream 24345 8100595 ~ 8101654 (+) True AMCG00008657
AMCG00008653 mRNA upstream 89765 8021668 ~ 8036234 (+) True AMCG00008653
AMCG00008652 mRNA upstream 109255 8001596 ~ 8016744 (+) True AMCG00008652
AMCG00008651 mRNA upstream 306757 7783608 ~ 7819242 (+) True AMCG00008651
AMCG00008649 mRNA upstream 400815 7722241 ~ 7725184 (+) True AMCG00008649
AMCG00008663 mRNA downstream 105980 8244041 ~ 8273718 (+) True AMCG00008663
AMCG00008665 mRNA downstream 138710 8276771 ~ 8293517 (+) True AMCG00008665
AMCG00008664 mRNA downstream 175354 8313415 ~ 8318696 (+) False AMCG00008664
AMCG00008671 mRNA downstream 219367 8357428 ~ 8364543 (+) True AMCG00008671
AMCG00008670 mRNA downstream 231646 8369707 ~ 8383963 (+) True AMCG00008670
TU63267 other upstream 186228 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 186228 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1107874 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2383249 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 2529200 5596023 ~ 5596799 (+) True G50215
TU63407 other downstream 175364 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 312105 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 943766 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 978676 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 1172025 9310086 ~ 9316151 (+) False AMCG00008710

Expression Profile