RNA id: AMCG00008658


Basic Information

Item Value
RNA id AMCG00008658
length 1032
RNA type mRNA
GC content 0.62
exon number 4
gene id AMCG00008658
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8140051 ~ 8146234 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgacctctgaccccacTTACCTGGGCCCAGACGGGGCTGGGGCAGGCTTGGTGGAAGTGGACACCTGCAACCTGGAATTAGAACGCAAATATGAGGTCATCCCTGCTGTCATCTGCGCCATGTGCTGCCTTTTCGGCATCATCTACTGCTTCTTTGGGTATCGCTGTTTCAAGGCGGTTATGTTCCTATCAGGGCTGATGTTTGGCTCCGTTATCATCTTCCTGCTGTGCCACAAGGAGCGGGTGCTGGACACCCAGCTAAGCGTGGAGGCCAGCGCAGGCATCGGCCTGGGCATCGGACTGCTATGCGGCCTGGTCACCATGCTGGTGCGCAGCGTTGGGCTCTTCATGACCGGCCTGCTGTTGGGCCTGCTGCTCGCCCTCGCCGCCCTTGTGGCCATGAACCAGTTCTACAGCCCGGGCACAGTCTGGGTGCCCCTGGGAGCCATGCTGGGCAGCGGGATGCTGTGTGCCGTCATCACCCTACAGTGGCAGAAGCTGTTCACTGTCCTCTCCACGGCAGTGTTCGGGGGCGCCATCATGACCGTGTGTGTGGACTACTTCATCGAGAATCTGAATCTGGTGGTCTATGTGTACAACCACATCCGCCTGATGGCTGCCCCGCCCCTCTGCTGGTACAGCTGGGTCATCATGGGCGTCTGGCCCGCGCTGAGCATGCTGGGAGTGGTGGTGCAGTGGAAACTGACGGCTGAGGGCTTCTCACACACTGAAGTCATCATCAGCCGGCGACAGAAGCGGGTGCAGCTGATGAGGATCCGGCAGAAAGATGCCAAGAAGCGTCAGCAGAGCGGAGCCCAGGAGGGCACCTACCGCCGCAAACCCACCCCCGTCAAGCGATACGCTGGAGACGTGCTGGCACCGAGCTACCTGCAGAGCCTCCGGGACCGCCAGATGGGCACGGGCACCTCCCTCAGCAGCCTGGGCACCGCCAACCACACCATGGTGGACTTTGACTACGACACGGGCTCCACAGTGCCCCTCACCGCCACCACCCCCGTCGTGCAAGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63355 lncRNA downstream 1990 8137475 ~ 8138061 (-) True G50657
TU63341 lncRNA downstream 34449 8105372 ~ 8105602 (-) True G50647
TU63323 lncRNA downstream 35248 8005638 ~ 8104803 (-) True G50632
TU63340 lncRNA downstream 40606 8098772 ~ 8099445 (-) True G50646
TU63303 lncRNA downstream 155100 7984740 ~ 7984951 (-) True G50615
TU63371 lncRNA upstream 36695 8182929 ~ 8185121 (-) True AMCG00008662
TU63426 lncRNA upstream 132518 8278752 ~ 8290801 (-) False G50711
TU63427 lncRNA upstream 132518 8278752 ~ 8324775 (-) True G50711
TU63433 lncRNA upstream 134981 8281215 ~ 8283597 (-) False AMCG00008668
TU63458 lncRNA upstream 211216 8357450 ~ 8360962 (-) True G50736
AMCG00008654 mRNA downstream 65027 8037032 ~ 8075024 (-) True AMCG00008654
AMCG00008655 mRNA downstream 278515 7819151 ~ 7861536 (-) True AMCG00008655
AMCG00008650 mRNA downstream 393747 7728099 ~ 7746304 (-) True AMCG00008650
AMCG00008646 mRNA downstream 597164 7527549 ~ 7542887 (-) True AMCG00008646
AMCG00008647 mRNA downstream 622209 7434320 ~ 7517842 (-) True AMCG00008647
AMCG00008662 mRNA upstream 38217 8184451 ~ 8190177 (-) False AMCG00008662
AMCG00008660 mRNA upstream 46018 8192252 ~ 8207177 (-) True AMCG00008660
AMCG00008659 mRNA upstream 85445 8231679 ~ 8244280 (-) True AMCG00008659
AMCG00008661 mRNA upstream 105620 8251854 ~ 8273688 (-) True AMCG00008661
AMCG00008668 mRNA upstream 137126 8283360 ~ 8293486 (-) True AMCG00008668
TU63350 other downstream 4637 8134581 ~ 8135414 (-) True G50656
TU63287 other downstream 237445 7901335 ~ 7902606 (-) True G50602
TU63135 other downstream 988579 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 988579 7145625 ~ 7151472 (-) True G50476
TU62870 other downstream 2254601 5748890 ~ 5885450 (-) True G50267
TU63425 other upstream 122789 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 124090 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 124090 8270324 ~ 8294354 (-) False G50712
TU63430 other upstream 145565 8291799 ~ 8294354 (-) False G50712
TU63463 other upstream 221682 8367916 ~ 8371330 (-) True G50739

Expression Profile