RNA id: AMCG00008660


Basic Information

Item Value
RNA id AMCG00008660
length 2298
RNA type mRNA
GC content 0.57
exon number 18
gene id AMCG00008660
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8192252 ~ 8207177 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTTATACATGATGAACTGTGAACTTTTGGCAACATGCAGTGCCTTAGGGTACCTGGAAGGAGAAACTTACCACCGCGAGCCAGACTGTCTGgAGAGTGTGAAGGATCTGATCCGCTACCTGCGCCATGAGGATGACACGCGGGACATCCGGCAGCAGTTGGTTCCCGATGACTCTGCCTTCAGACATCACTTCCTGCAGATTGTGTCCTACCTGCAGGCTTATAAGCAGGCCTTTGCCAACGAGAAGGTCTTTGGAGTCCTGAGTGAGAAACTGTACAACCTGCTGCAAATGGAGTgggagcagagagaggaggaggacaaCCTGCTGATCGAGAGGATCCTCCTGCTGGTGAGGAACGTGCTGCACATCCCCGCTGACCCCTACGAGGAGAAGACTGTAGACGATGATGCCAGTATCCACGACAAGCTGCTGTGGGCCATGCACATGAGTGGCATGGACGACCTGCTGAAGTTTCTGGCCAGCGCCCCCAGTGAGCAGCAGTGGAGTCTGCACGTGCTGGAGGTCATCTCCCTGATGTTCAGAGACCAGACCCCTGAGCAGCTGGTGAGTGCAGGCCAGTCTCGCTCAGTGCAGGAGAAGCAGAAGGATGCCCAGGAGCTGGAGGTGCTGCGGCAGAAAGAGATCGCAGAGAAGAGGAGTCGGGTGCTGCAGAGAGGAAGCAGGCACTCCCGATTTGGAGGCTCCTATGTTGTCCAAGGATTGAAGTCACTGGGGGACAAAGACGTCATCTATCACAAGGGGCTGCACAATTTCAAGAACTACAGCCACGACATGGGCAAGGCAGTGCGCAGGGTGCCCAAGCGGCGACAGCGGGCGAGGGACCCAGAGAACTGCCGGAGGTCGGCGCTGAACGTGCGGCTGTTCCTCAGGGAGTTCTGCATCGACTTCCTGGAGAACTGCTACAACCGCCTCATGTACCTGGTCAAGGACGGGCTGTTGCGGGAGAAAGCGCAGCAGCATGACGAGACGTACTACCTGTGGGCGTTGGCCTTCTTCATGGGCTTCAACCGCAGCCATAACTTCCGCATGGACCTGGTGTCCGAGACTATGTCCATCCGGACCTTCCACTACATCGAGCGCAACCTCACCAACTACTACGAGATGATGCTGACTGACCGCAAGGAGGCTACTTCTTGGGCACGCAGGATGCACCTGGCCCTGAAGGCATACCGGGAGCTGCTGATGACCGTGAATGAGATGGACCACTCACGAGATGACAATATCCGCCAGAGTGCATCTGTCATCAAAAGCAACATCTTCTACCTCATGGAGTACAGGGAGATCTTCCTGACGCTACTGCGGAAATTTGACGAGACCAAGCAGCCCCGCTCCTTCCTGAAGGACCTGGTGGAGGCTGCCCACCTGTTCCTGCGCATGCTGGAGCGCTTCTGCAAGGGCCGCAACAACCTGGTGGTGCAGAGGAAGAGGGTAAAGAAGAAGAGGTCCAAAGGCAAAAGGAGAAGTGGCCCTGCTGTGGACAGCTCACCTGAAGCCCTGGAGCAGTGCTGGCAGGTGGTGTCAGAGGAGCTCAAGGCCACAGGCTTCCAGTTGTCAGAGTCGGTGACAGAGGGCACTGTGCTGTTCGACGCTGCCTCCGAGGTGCCCCTGGAGGAGCAGCGGGCAGAGGCTATGGTGCGGATCCAAGATGCCCTACTGGCTAAACAGGGGCCAGAGGCGTTGGCGCTGATCAGGGCTGCCAGGGAGGTGTGGCCAGAAGGGGATGTCTTTGGAGCAGCTGATGTAGTAGCTGAGGAAGAGCTTGAGCTCCTGAAACAGATCCTATTTGCCAACCTGCCCAGACCAGCCACCACTGAGcctgtggaggaggaggaggaggtgggagagggggaggaagaggaggagattGAATCTGTGCGTGTTTCTGAGGCAGAATTCAACTTCCTGGACTACATTAAGAGGTTCGCCAGCCCCAATATCTTGCAGCCCtacctgctgctgctgaagaGTTACAATCAGAACAGCACCCACACCAACCATTGCATCGTCCGTATGCTGCACCGCGTGGCCGTCGACCTCAAGATGGATGCCCTGCTCTTCCAACTCTCTGTCTTCTGCCTCTTCAACAAGATCCTGTGCGACCCTGCTGCCACAGCATACAAGGAGCTGGTGACCTTCGCTAAGTTCGTGCTGAACCGCTTCTTCGCCCTCGCAGCGAGGAACAACAAGGCCTACGTGGAGCTACTGTTCTGGAAGAACGTGGGTGCCGTGCGGGAAATGACTGAGGGCTACAGCAAAGAGGAGGACAAGTGA

Function

GO: NA

KEGG:

id description
K03155 TIMELESS; timeless

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63371 lncRNA downstream 7131 8182929 ~ 8185121 (-) True AMCG00008662
TU63355 lncRNA downstream 54191 8137475 ~ 8138061 (-) True G50657
TU63341 lncRNA downstream 86650 8105372 ~ 8105602 (-) True G50647
TU63323 lncRNA downstream 87449 8005638 ~ 8104803 (-) True G50632
TU63340 lncRNA downstream 92807 8098772 ~ 8099445 (-) True G50646
TU63426 lncRNA upstream 71575 8278752 ~ 8290801 (-) False G50711
TU63427 lncRNA upstream 71575 8278752 ~ 8324775 (-) True G50711
TU63433 lncRNA upstream 74038 8281215 ~ 8283597 (-) False AMCG00008668
TU63458 lncRNA upstream 150273 8357450 ~ 8360962 (-) True G50736
TU63465 lncRNA upstream 165329 8372506 ~ 8384007 (-) False G50740
AMCG00008662 mRNA downstream 2075 8184451 ~ 8190177 (-) False AMCG00008662
AMCG00008658 mRNA downstream 46018 8140051 ~ 8146234 (-) True AMCG00008658
AMCG00008654 mRNA downstream 117228 8037032 ~ 8075024 (-) True AMCG00008654
AMCG00008655 mRNA downstream 330716 7819151 ~ 7861536 (-) True AMCG00008655
AMCG00008650 mRNA downstream 445948 7728099 ~ 7746304 (-) True AMCG00008650
AMCG00008659 mRNA upstream 24502 8231679 ~ 8244280 (-) True AMCG00008659
AMCG00008661 mRNA upstream 44677 8251854 ~ 8273688 (-) True AMCG00008661
AMCG00008668 mRNA upstream 76183 8283360 ~ 8293486 (-) True AMCG00008668
AMCG00008669 mRNA upstream 109450 8316627 ~ 8320297 (-) True AMCG00008669
AMCG00008667 mRNA upstream 122722 8329899 ~ 8332822 (-) True AMCG00008667
TU63350 other downstream 56838 8134581 ~ 8135414 (-) True G50656
TU63287 other downstream 289646 7901335 ~ 7902606 (-) True G50602
TU63135 other downstream 1040780 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 1040780 7145625 ~ 7151472 (-) True G50476
TU62882 other downstream 2399668 5787750 ~ 5792584 (-) False AMCG00008608
TU63425 other upstream 61846 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 63147 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 63147 8270324 ~ 8294354 (-) False G50712
TU63430 other upstream 84622 8291799 ~ 8294354 (-) False G50712
TU63463 other upstream 160739 8367916 ~ 8371330 (-) True G50739

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006237 False 4416 mRNA 0.48 31 NC_007122.7 3211827 ~ 3249458 (+)