RNA id: TU63371


Basic Information

Item Value
RNA id TU63371
length 1811
lncRNA type sense_over
GC content 0.44
exon number 3
gene id AMCG00008662
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8182929 ~ 8190177 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctccctcttttcagAAGTTCAGTCCCTAGGGCAGTCTGCAGATGAAGCCCAGGAGTCCACTTCTGACAGCGAGACCACGAGagtCCCCGAAGCCAGTGTAGAGTGTAAGGCGTCCATGAAAAGGAGCAGAGTTTTGGACAGTGACGAAGAGAGAGAAGAGGAAGCAGACAGCTTGGCGCCAATGGATCTGGGGGCCGTGGACCCCGATTCCGAGGCGGAGGACCTCGCAGCCCCCGCCAAGCGCCGACGCCACCGAGCCCTCATagatgatgaggaggaggaagactaGAAATGACATataaacaaaagtatatatGTTGTAATCGCATCATATTAAAAAGCTCCACAGACCTCCCTCTGTGCAGGAGGGGTGGGGAGAAGAGGTTTCCGTGATAATGCTTCACCAACGCACCAATGACCTACAAGCTAGTGCCTGAATCGGCAAATGCTGGAGTAGTGTACGAGGGGAAGTACTCTtggacttattttgttttttgttttttttcttgtatatgTTGTTCATTTAAAAGCCAGATCTCATTTTATCAGTTGTTTGGGGCTGAGATTATTGCCTGAATATGGTGCTGGTAGTGTTTTACTGTATTGTTGACTTTGTTCTACAAGTGATTTGAGCTGATGTGACGGTTTTGTGACTGGTCTCTGCTGTCGGATGGCTGTGGgagattttaattgtattcagttCCCTACCTCTCCCACTGGACCGGTCCTGAGCCACGGCCTGGAGCGCTTACAGCTTCAAGAGTGAGGATTGTACAGACGTTGTCCTCTCCCGTGATCACTGCAATGTGCCACTTGTGTTGGCACCTCCTGGAGTCAAGACCCAGGCCCCCACATCTGAAGCTCACCTGTAATCTCTATGGCTCTCAAAAACAGCCGGAGATACTTGAGTACTGTGCTGGGACAGCTGAGCAGCTTTTGTGGTTTCGCTAAGGCAGAAATCTCAAACACTGGTCCCTGGGGGCCCCTATTCAGTGGGTTCTGTGGGTTacctttatttaaattgaatgttaTTGAATTCTgaagttcttgtttttttgatCAGTAACCAGCTTGCGTTTCCCATTCTTTGCAAATTGTCCATTTGGGGATTTAAGATTACTGCACTAAGGTAATCACCTGCATCTGCTTACATCTCCCACATGTGTAAACACTGGGAACAGACACTCCAGATTTGGTTTGGGCTCAATTCTTTGTTCCTTAACCACCTGCTTTGGAGTGTGAATGTAGGAGATGGTGCCCCTTGCATCTCCAGAAGTTTTGTGTATAAATGGACTGGGTTACTAAATGAGGTTTAATCATTCCTTGCTGTATACCTGTGGGTATAAAACGCAACCAAGGCATGCTTCTATTTACTACCTCTGTGCCGTACCAGCCAGTAttgtactatactgcactatcCATGTCTAATATTCACTGTAATGAGAGACCACGTATTACAGGACACTTGCCTGTAatcttaatgtaaatgtaatgctgtTGTCTTTGTTAAATCACGTGACCATCAACACAcctttaacaaaaacatttatataaagagTCATGTGAATTTAGTCATTGAAAGTAAAGGGATTCCTGCCCCcccctgtatttattttaaagggcagttgaattaaaatgcaattagtTAAAATTTTGGGTAATTGGAACAACAGGTTTATCTTGCCCAGAAGTACggagttttattgttttcaaaacttgtatggtttttaaatgttctagaAATCGGCTTATTTTTTATGGTAgtaacaatgttttcttttctttacaaaaataaataaatctgaaacacA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63355 lncRNA downstream 44868 8137475 ~ 8138061 (-) True G50657
TU63341 lncRNA downstream 77327 8105372 ~ 8105602 (-) True G50647
TU63323 lncRNA downstream 78126 8005638 ~ 8104803 (-) True G50632
TU63340 lncRNA downstream 83484 8098772 ~ 8099445 (-) True G50646
TU63303 lncRNA downstream 197978 7984740 ~ 7984951 (-) True G50615
TU63426 lncRNA upstream 93631 8278752 ~ 8290801 (-) False G50711
TU63427 lncRNA upstream 93631 8278752 ~ 8324775 (-) True G50711
TU63433 lncRNA upstream 96094 8281215 ~ 8283597 (-) False AMCG00008668
TU63458 lncRNA upstream 172329 8357450 ~ 8360962 (-) True G50736
TU63465 lncRNA upstream 187385 8372506 ~ 8384007 (-) False G50740
AMCG00008658 mRNA downstream 36695 8140051 ~ 8146234 (-) True AMCG00008658
AMCG00008654 mRNA downstream 107905 8037032 ~ 8075024 (-) True AMCG00008654
AMCG00008655 mRNA downstream 321393 7819151 ~ 7861536 (-) True AMCG00008655
AMCG00008650 mRNA downstream 436625 7728099 ~ 7746304 (-) True AMCG00008650
AMCG00008646 mRNA downstream 640042 7527549 ~ 7542887 (-) True AMCG00008646
AMCG00008660 mRNA upstream 7131 8192252 ~ 8207177 (-) True AMCG00008660
AMCG00008659 mRNA upstream 46558 8231679 ~ 8244280 (-) True AMCG00008659
AMCG00008661 mRNA upstream 66733 8251854 ~ 8273688 (-) True AMCG00008661
AMCG00008668 mRNA upstream 98239 8283360 ~ 8293486 (-) True AMCG00008668
AMCG00008669 mRNA upstream 131506 8316627 ~ 8320297 (-) True AMCG00008669
TU63350 other downstream 47515 8134581 ~ 8135414 (-) True G50656
TU63287 other downstream 280323 7901335 ~ 7902606 (-) True G50602
TU63135 other downstream 1031457 6947889 ~ 7151472 (-) False G50476
TU63134 other downstream 1031457 7145625 ~ 7151472 (-) True G50476
TU62882 other downstream 2390345 5787750 ~ 5792584 (-) False AMCG00008608
TU63425 other upstream 83902 8269023 ~ 8269326 (-) True G50710
TU63428 other upstream 85203 8270324 ~ 8274515 (-) True G50712
TU63429 other upstream 85203 8270324 ~ 8294354 (-) False G50712
TU63430 other upstream 106678 8291799 ~ 8294354 (-) False G50712
TU63463 other upstream 182795 8367916 ~ 8371330 (-) True G50739

Expression Profile