RNA id: TU63407



Basic Information


Item Value
RNA id TU63407
length 1005
RNA type TUCP
GC content 0.53
exon number 5
gene id AMCG00008664
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8278853 ~ 8324778 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CATGGTTACGGGATAGAGCGGGTCCCTTATATCTTCAGGTCTCCATCCATGTGTCTGCATTTTTCACTTACATCGACCTCATTGTTGTCGGGCTGTAAGGAAGGAGTTTTCGTTCTTGCCTTTTCTATCTcctctgaaaagaaaaactgaaactatgAGAGTCTGATGTTTCTCGTAGCATATCCCTTGAACAATACAGATGTTCCCAGACTTATGTGAGGGTTCGGTTCCCCAACTTTCTACCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTATTGCCTGGAGCATGGGATCCAGCCTGATGGCCAGATGCCCAGCGATAAGACCATGGGAGGAGGGGATGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCGGGCAAGCACGTGCCCAGAGCTGTCTTTGTAGATCTGGAGCCCACAGTCATTGATGAGGTGCGCACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACTGGCAAGGAGGATGCTGCCAACAACTACGCCCGTGGGCACTACACCATTGGCAAAGAGATCATCGACCTGGTGCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGCTTCTTGGTCTTCCACAGCTTTGGAGGTGGTACCGGTTCTGGTTTCACCTCCCTGCTGATGGAACGCCTGTCCGTTGACTATGGCAAAAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCCACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACAACCCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTCGACAACGAGGCCATCTATGACATCTGCCGCAGAAACCTTGATATTGAACGCCCCACCTACACCAACCTCAACAGGCTTATTGGCCAAATTGTCTCCTCTATCACTGCATCCCTCCGATTTGATGGTGCCCTAAATGTTGATCTGACCGAGTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63421 lncRNA upstream 22624 8278853 ~ 8290801 (+) False AMCG00008664
TU63402 lncRNA upstream 44099 8269007 ~ 8269326 (+) True G50698
TU63396 lncRNA upstream 66593 8246577 ~ 8246832 (+) True G50692
TU63372 lncRNA upstream 122640 8189825 ~ 8190785 (+) True G50668
TU63317 lncRNA upstream 238421 8068760 ~ 8075004 (+) True G50627
TU63486 lncRNA downstream 255127 8572729 ~ 8589128 (+) True G50757
TU63573 lncRNA downstream 485604 8803206 ~ 8809391 (+) True G50823
TU63641 lncRNA downstream 676934 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 874175 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 874928 9192530 ~ 9192919 (+) True G50930
AMCG00008665 mRNA upstream 19908 8276771 ~ 8293517 (+) True AMCG00008665
AMCG00008663 mRNA upstream 39707 8244041 ~ 8273718 (+) True AMCG00008663
AMCG00008656 mRNA upstream 175364 8125999 ~ 8138061 (+) True AMCG00008656
AMCG00008657 mRNA upstream 211771 8100595 ~ 8101654 (+) True AMCG00008657
AMCG00008653 mRNA upstream 277191 8021668 ~ 8036234 (+) True AMCG00008653
AMCG00008671 mRNA downstream 39826 8357428 ~ 8364543 (+) True AMCG00008671
AMCG00008670 mRNA downstream 52105 8369707 ~ 8383963 (+) True AMCG00008670
AMCG00008678 mRNA downstream 350999 8668601 ~ 8669729 (+) True AMCG00008678
AMCG00008675 mRNA downstream 362731 8680333 ~ 8693830 (+) True AMCG00008675
AMCG00008677 mRNA downstream 377240 8694842 ~ 8699781 (+) True AMCG00008677
TU63267 other upstream 373654 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 373654 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1295300 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2570675 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 2716626 5596023 ~ 5596799 (+) True G50215
TU63473 other downstream 132564 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 764225 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 799135 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 992484 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 992484 9310086 ~ 9316151 (+) False AMCG00008710

Expression Profile