RNA id: TU63420



Basic Information


Item Value
RNA id TU63420
length 793
lncRNA type read_through
GC content 0.40
exon number 4
gene id AMCG00008664
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8278853 ~ 8324778 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAAAGAGtgtttcaatacaaataaaaatatattcaagaCGAAACCACTGTACTTTTTATGGTGAGATTTATTGCATGTAATGGACAAAACCACAAGTTGTGCCAAGACATGTAAAAAGGAATAGACAACGATCACAGGTCTGACGACTAAGTTAATTTAATCTTTAGAAGATTGTTACAGCCTTAATGTAGATATCCTTCTTTCATGGCCTTTTTTGCTATTACACATTTTCTCACCAGGCACATGACAAAAAAACCTACCTTCACATGAACAAAAGGAACTAATTCAGTGCATAATGACTAACAAAATATGGTGGATTTAATactcctccccttcctcctctccctctccctcaacGGAGTCGACGCCCACCTCTTCGTAGTCCTTCNNCAGAGAAGACATGGCGGCCCTGGAGAAGGACTACGAAGAGGTGGGCGTCGACTCCgttgagggagagggagaggaggaaggggaggagtATTAATCCAACTGGCTCCTCAAGTCCTTTTGGTCACTACAGCATGCCCATCATTGGTCAGAAGTTAACACATCTTAACTTCTGCATTAGTTTAGGCTGTGATGTTACACTGAGGGTGTAGGTGTTCTGTCAGTTCAGAAATTGTAATGAAAGATGTTGTAGTTGTATTTAAGGATGTTACAATCTTGACAACTTCTGGTTTTTGTGTGTTCTGTTCTGATTTTAGGTGTGTGATTGGTATGATTTCACTTTACCCCTTTTTTTTGTCTGTCATCTTCTGACAATGATCTGCAATAAATGGTTGaatcaacacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63402 lncRNA upstream 9527 8269007 ~ 8269326 (+) True G50698
TU63396 lncRNA upstream 32021 8246577 ~ 8246832 (+) True G50692
TU63372 lncRNA upstream 88068 8189825 ~ 8190785 (+) True G50668
TU63317 lncRNA upstream 203849 8068760 ~ 8075004 (+) True G50627
TU63305 lncRNA upstream 282792 7995755 ~ 7996061 (+) True G50617
TU63486 lncRNA downstream 247951 8572729 ~ 8589128 (+) True G50757
TU63573 lncRNA downstream 478428 8803206 ~ 8809391 (+) True G50823
TU63641 lncRNA downstream 669758 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 866999 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 867752 9192530 ~ 9192919 (+) True G50930
AMCG00008663 mRNA upstream 5135 8244041 ~ 8273718 (+) True AMCG00008663
AMCG00008656 mRNA upstream 140792 8125999 ~ 8138061 (+) True AMCG00008656
AMCG00008657 mRNA upstream 177199 8100595 ~ 8101654 (+) True AMCG00008657
AMCG00008653 mRNA upstream 242619 8021668 ~ 8036234 (+) True AMCG00008653
AMCG00008652 mRNA upstream 262109 8001596 ~ 8016744 (+) True AMCG00008652
AMCG00008671 mRNA downstream 32650 8357428 ~ 8364543 (+) True AMCG00008671
AMCG00008670 mRNA downstream 44929 8369707 ~ 8383963 (+) True AMCG00008670
AMCG00008678 mRNA downstream 343823 8668601 ~ 8669729 (+) True AMCG00008678
AMCG00008675 mRNA downstream 355555 8680333 ~ 8693830 (+) True AMCG00008675
AMCG00008677 mRNA downstream 370064 8694842 ~ 8699781 (+) True AMCG00008677
TU63267 other upstream 339082 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 339082 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1260728 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2536103 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 2682054 5596023 ~ 5596799 (+) True G50215
TU63473 other downstream 125388 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 757049 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 791959 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 985308 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 985308 9310086 ~ 9316151 (+) False AMCG00008710

Expression Profile