RNA id: AMCG00008666


Basic Information

Item Value
RNA id AMCG00008666
length 1569
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00008666
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8332841 ~ 8356553 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATAGGGCCAAGAGGCTCCCGCGGGTTCTCTCGTTACCGCTCATGGAATACCAGGATGTACCCCATGTGGAAAGAGGGCGACCGCCGCAACAGAGACTGCTGGAGAGGGGGCGAAGTGACCTTTGACATCAGTAACGATGCCCCCACTCTCATCGGTGCCAAGGCCACCTTCACCATCGAGCTGCGCTTCCCGCACAACCAGACCGTGCTGCCCAACGGCCAGGTGGTGTGGTCCGAAAACTGTACCATTAACGggaCCCACTATCGGAGAGGGGAACAAGTTTACCCCGGGCGCAACTCCTCAGAAGAATGGTCTGGGGTCTTTCCAGATGGGACCCCTTTCACCAGAACCTCAGACAAGAAGCCCAGCTATGTGTTTGTTTGGAAGACATGGGGACGGTACTGGCAGGTAGCAGACggcccctcttcctccctcacCATCGGCACTGACAATGTACCCCTTGGCTCGTACAACATGGAGGTGGTCATCTACCACTGCAGGGGCAAGGAAAAGAGAAAGAAAGATTTGGATCAGATTCCCTTTGCCGTGGACCTGTCACAAGTCAATGACCTTAACGTGGCTGACCAGAACTTCATCCAAAACCGGGCCATCGCCTTCTCCATCCATCTGCATGATCCCAGCCAGTACCTGAGCGACTCTGATATCACCTTCAACTGGGACTTTGGGGACAATAGTGGCACCCTGATCTCTCGTGACCTCACAGTGACCCACACCTACCTCTCCCCTGGCACTTTCCGCCCACAGGTGGTCCTGCAGGCAGCCATCCCCAACGCAGGTTGCACCACCTCCGGAGACATCCCCACCGCTGCCAACCCCACCGCTGGACTGCTCACCTCCCAGCCCCCACAACAGGGCACCACTGCCTCAGGTGATCCTTCTGCTGCCCCGGTGGCAGTGTCCACCCCTGCTGCTGCCCCCACGGTTAACCCCTCTGCTCCTACCCTGCCTCAAGACGCAGCCAGCATCGACCTGGCAGTACCCGTGGACAACACCGTGGTACctgcagagggagagacggaCCCGGCTGCAGCAGTCGAAGGGGAAGCCGCAGCTGTTCCGGCTGTGTCTGCTGTTCCCACTGCCGAGGCTGCAGAGGACATTGCTGTAGATGAGACGGCTGCAGAGGAACCCATTGTGCCCGCTGTCTCTGCTGCTCCAGCTGAAGAAATCGAAGGGGACGCCGTGGTGGCTGCCTCTGCTGCCCCAGCAGACATCGTTGTCTCGGAGGCAGCCGTTGATGAGACAGCCATCCCCGTTGATGAGACAGCCGTCCCTGTTGATGAGACAGCCGTCCCCTTTGATGAGACAGCCGTCCCTGTTGAGGAGGTTGAAAATGAGGCCATCCCAGCAGACACCGCAGCCCCAGTCAACCCCATCACACTGGCTGCCTCCGTCCTCCCAGCTGAGACAgacctctctgtgtctcttgtgGCAACAGCTCAGGCCGAGGAGGCTACTTTTAATTTACCTTTCACCCTTCACGTCTGCGATGACTTCTCAGAACCTGCAGCAAAGAAAGAACAAGGAATAACACAAAACCGCTAA

Function

GO:

id name namespace
GO:0048069 eye pigmentation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17304 PMEL, SILV; melanocyte protein PMEL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63427 lncRNA downstream 8066 8278752 ~ 8324775 (-) True G50711
TU63426 lncRNA downstream 42040 8278752 ~ 8290801 (-) False G50711
TU63433 lncRNA downstream 49244 8281215 ~ 8283597 (-) False AMCG00008668
TU63371 lncRNA downstream 147720 8182929 ~ 8185121 (-) True AMCG00008662
TU63355 lncRNA downstream 194780 8137475 ~ 8138061 (-) True G50657
TU63458 lncRNA upstream 897 8357450 ~ 8360962 (-) True G50736
TU63465 lncRNA upstream 15953 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA upstream 23284 8379837 ~ 8384007 (-) True G50740
TU63521 lncRNA upstream 217461 8574014 ~ 8574338 (-) True G50784
TU63589 lncRNA upstream 480806 8837359 ~ 8840655 (-) True G50836
AMCG00008667 mRNA downstream 19 8329899 ~ 8332822 (-) True AMCG00008667
AMCG00008669 mRNA downstream 12544 8316627 ~ 8320297 (-) True AMCG00008669
AMCG00008668 mRNA downstream 39355 8283360 ~ 8293486 (-) True AMCG00008668
AMCG00008661 mRNA downstream 59153 8251854 ~ 8273688 (-) True AMCG00008661
AMCG00008659 mRNA downstream 88561 8231679 ~ 8244280 (-) True AMCG00008659
AMCG00008673 mRNA upstream 99964 8456517 ~ 8457954 (-) True AMCG00008673
AMCG00008672 mRNA upstream 146147 8502700 ~ 8504696 (-) True AMCG00008672
AMCG00008674 mRNA upstream 194016 8550569 ~ 8565844 (-) True AMCG00008674
AMCG00008681 mRNA upstream 279247 8635800 ~ 8658560 (-) True AMCG00008681
AMCG00008682 mRNA upstream 345225 8701778 ~ 8717326 (-) True AMCG00008682
TU63429 other downstream 38487 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 38487 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 58326 8270324 ~ 8274515 (-) True G50712
TU63425 other downstream 63515 8269023 ~ 8269326 (-) True G50710
TU63350 other downstream 197427 8134581 ~ 8135414 (-) True G50656
TU63463 other upstream 11363 8367916 ~ 8371330 (-) True G50739
TU63526 other upstream 300175 8656728 ~ 8660017 (-) True G50788
TU63794 other upstream 1034290 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 2216930 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 2320710 10677263 ~ 10718201 (-) False AMCG00008748

Expression Profile