RNA id: AMCG00008667


Basic Information

Item Value
RNA id AMCG00008667
length 642
RNA type mRNA
GC content 0.64
exon number 5
gene id AMCG00008667
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8329899 ~ 8332822 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACACCTTGTCCTCAGATGCAGCCGCTGATCCTACCGTAGCCCTGGCAGAGGCCGCCACAGGGTTGGTGGTGGAGGTTGGCACAGTGGCAGCAGATGTGCCAGTGCTGGTGGCCAAGCGCCAGGCCCCAGAGACCCCTGCCGAGGGGTGCCTCATCTACCGCTATGGCTCCTACTCCACCGGAGTGGACATCGTCCAGGGCATCGAGAGCGTGGAGATTGTCCAGGTGGCCAATGTCGTGATGGAGGCTGAGGTGGAGCAGAACGCAGTGTGCACGGTGGTGTCCGATGCCGACTGCGCAGTCCCTGTCCAGACCGTGTGTTCCGCGGTGCAGCCATCGCCCGAATGCCAGCTCATCCTGCGCCAGTTCTTCAATGACACGGGCGTCTTCTGCATCAACGTGTCGATGACCAACGACGTGAGCCTTGCCGTCGCCAGCGCTCGTGTCAGCGTCACTgtagTGGGAGCTATAGCCTTGACCTACAGGCGCATCAAGGAGTACCGTCCACTGAGAGAGGATCCCACAGGCAGTGCGTCAGGCAGCCCCGGCCACTCCTCCTTCCCCATGCTGCTGTGGAGTCTGCTGGGCCGCCAGCCGGCCGGAGAGAGCCGCCCCCTGCTGCAGGGCCGAGTGGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63427 lncRNA downstream 5124 8278752 ~ 8324775 (-) True G50711
TU63426 lncRNA downstream 39098 8278752 ~ 8290801 (-) False G50711
TU63433 lncRNA downstream 46302 8281215 ~ 8283597 (-) False AMCG00008668
TU63371 lncRNA downstream 144778 8182929 ~ 8185121 (-) True AMCG00008662
TU63355 lncRNA downstream 191838 8137475 ~ 8138061 (-) True G50657
TU63458 lncRNA upstream 24628 8357450 ~ 8360962 (-) True G50736
TU63465 lncRNA upstream 39684 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA upstream 47015 8379837 ~ 8384007 (-) True G50740
TU63521 lncRNA upstream 241192 8574014 ~ 8574338 (-) True G50784
TU63589 lncRNA upstream 504537 8837359 ~ 8840655 (-) True G50836
AMCG00008669 mRNA downstream 9602 8316627 ~ 8320297 (-) True AMCG00008669
AMCG00008668 mRNA downstream 36413 8283360 ~ 8293486 (-) True AMCG00008668
AMCG00008661 mRNA downstream 56211 8251854 ~ 8273688 (-) True AMCG00008661
AMCG00008659 mRNA downstream 85619 8231679 ~ 8244280 (-) True AMCG00008659
AMCG00008660 mRNA downstream 122722 8192252 ~ 8207177 (-) True AMCG00008660
AMCG00008666 mRNA upstream 19 8332841 ~ 8356553 (-) True AMCG00008666
AMCG00008673 mRNA upstream 123695 8456517 ~ 8457954 (-) True AMCG00008673
AMCG00008672 mRNA upstream 169878 8502700 ~ 8504696 (-) True AMCG00008672
AMCG00008674 mRNA upstream 217747 8550569 ~ 8565844 (-) True AMCG00008674
AMCG00008681 mRNA upstream 302978 8635800 ~ 8658560 (-) True AMCG00008681
TU63429 other downstream 35545 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 35545 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 55384 8270324 ~ 8274515 (-) True G50712
TU63425 other downstream 60573 8269023 ~ 8269326 (-) True G50710
TU63350 other downstream 194485 8134581 ~ 8135414 (-) True G50656
TU63463 other upstream 35094 8367916 ~ 8371330 (-) True G50739
TU63526 other upstream 323906 8656728 ~ 8660017 (-) True G50788
TU63794 other upstream 1058021 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 2240661 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 2344441 10677263 ~ 10718201 (-) False AMCG00008748

Expression Profile