RNA id: AMCG00008670


Basic Information

Item Value
RNA id AMCG00008670
length 4946
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00008670
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8369707 ~ 8383963 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAAATGCGTAACTTAATTTTGTCACTGACGACCCTCCATACTCTTGTGTTTTGAAGTTAAGGAGAGCAGTTGGGGACCAGTGTTTCATCTTGTAGCTTTTCTTTCTGAAGTAGTTTGTTCTCAtcagGTTTTTTCCGGCAACAAGATCCGGCCAGCTTCTCAGTTGGAGGAGCCCCTTTCGCCCCCAACCCGTGGTCATTGTCCCtcccatcccccccaccccccctcccctgtcATCTCCACACCACCCGCTCCCCTCCTCCACACCACCGTCCCTGAACATTGGCTATGGCAGGGCGCCCGTCGCGGCCCAATGGCCAGCCCCAGCCCGGTAAGGTGTGCCAGTTCAAGTTGGTGCTGCTCGGCGAGTCGGCGGTGGGCAAGTCCAGCCTAGTGCTGCGATTCGTCAAGGGCCAATTCCAGGAATACCAGGAGAGCACCATTGGAGctGCGTTCCTGACTCAGTCTGTGTGTTTGGATGACACCACGGTGAAGTTTGAGATCTGGGACACAGCAGGCCAGGAGCGCTATCACAGCCTGGCCCCCATGTACTACAGAGGAGCCCAGGCAGCCATCGTGGTCTATGACATTACCAACACGGAGACATTTGGACGGGCTAAGACCTGGGTGAAGGAGCTGCAGAGACAGGCCAGTCCCAACATTGTCATCGCACTGGCCGGCAACAAGGCGGACCTGTCTGCAAAACGGGCTGTGGAGTATGAAgAAGCCCAGGCCTATGCAGATGACAACAGCCTTTTATTTATGGAAACTTCCGCCAAGTCTGCCATGAACGTAAACGATCTCTTCCTGGCAATAGCCAAGAAGCTGCCAAAGAGTGATCCCCAGGGTGGCACTGGTGGGGCACCGGGCCGTGGGGGGCGCACCGGAGTGGATCTGAGCCAGCCCAGCCAGCCAAGCAAGAGCCAGTGCTGTGGGAattgaggagagagagagtgatggggTGGGGAATGCATGGAGAGAGGGAGTTGGGATTTGGGGGTTGGGGAAGGGGAATTGTGGATAGTGCATTACTGGAACCAATTCTAGGGGGTGTCAGAGCCCTGTGTCTCAAATTGAGCCTCATATCTTAAATCCCACAGTCTAATCCCACCCACTGACCCTTCCCAGAGAGAAGCCCACTAACCTGGGCTCACTTTGAGACTCTTCTGCACTGACACACCCAGCTACTACGCTGATCCCACGAGACAGCCGCACACTTCAAATCATTTCCCTCGACAAAGTGTACAACCATAACAGCACTGCCCATTTTCAATAACGGACATTGCAGAGTGTTACAACAGACGTGTGCTCTCTAAGGACTGGCATGAACTGCTTGACAAGTGCTTCCCTGGAGCAGGGCAACTGTTTGAAGGGTAGTAAGTGATTTGAAGCAGCACTACTACAGATGTCTGAATCTCGAGATCTGCTTTGGTTTTGGTGAAAGGCACCGGGCCAAGTCCTCACCCGGAGAATGTTGAAGGTGTGCAGTACAGAATCGCAAATCAGATCTGCCCCCAATATTTCCATTACATTTACCAATTCTGCAGTTCTGATACAAGGAAATGGGGATCTGCTATAGACGCACCATTATTCAGTCAGTCATCATTTGCCACATTCCAGCTAAAAGATGGAATTTGAGCACAGTGAATGCAGTGGCGAAACCTGACTTCAATACCTTCTCTACACCATCTCCAAGGGCACAATTCATAACAAAACTCCACAGCACACAAATGCAGAAACCTACACTGATGTTTCagttaagaaatgtataaacgACTTGTTGGTTTTCATTATTCACTGATGTGCATCTGACAATTAGGGTTGCCACAGATTTCAAGTATCCACGTCCAGCATGTCAGAGAGTGAAAAGTACTTTTTTGATATGGTGATTTTACTttcatgtctgtgtttttcccAAGATTAAGAAGCATTACCTCTGGTTTACAGCAAAGGTTGGTAGCAAAAAGTTGATGCATATTTAACTACTCATTTGGTAGTAAAGAGGTTGGTCATTGTGGTAAATCGGTCTCCATATTTCTCTAAATGTACTACCCAGCTGTGATCTGTGATGGGTCCACAATTTGccgtacattttatttagtacaCCATTGAGTTTTTGGTCATTGTAATAGTCGTTGGTGAGGAACGTTAAGTACTAGACTGCACTGTTGAGTTTAAGACTTGACCAATTCAGATCTGTTCTAATAAACCCGGACAGGCTAGGCCCATAAGAGAGAGGGATGGCAGTGGGGGCTGGCTTGTGTTCAATGTGAAGCCCTGCATAGTAGAACTGACAAGAGGGTTATTGGTTGGCAGTCTGACTATGAAAATCCCAACTGTATTCCAGCAAGTATGTGGCAGTATGCAGTGTAAAACAATGTGGCCAAGTGGTGAACAGTGATTTCAGAGCCAAGGCCTGTTGATTTTAAGATCCTGTTCTGCACAAGTTTAGGGAAGTTTATATTCCAAGGTATTGTATTGGCTTTGGAAATGGTGgctagaaaatatttttaaatcgtGCTTGAGAGCTTTGATGGAAGGCAGACTGACAGATGTGACAAATGGACCACAACAATAATCCTACAGAAAAAAAGTCTATAAATGGGAAGTGTGGGATTAAAATATTAGGCATTTTATaacgggggggggggtagaCTAGAGTGGATTCAACGAAGGAAGGGGTGCTTTTTATCACGCCACCCCTTCAGTTACCAAATTCCTAATATTTTAGGAAAGAGGAATAGGATTCTGCTGGAGATGGGGTAGACAGTTGATCGAGTGATGGGGTGAGTAGGGCAATGCTTGGAGGGTCTGAAGGGGCCAATGCAGTGACCACAGTGTTGAGAAGCAAGCAAAGGCAGGTCTGGACACAGTCTCCTCATTAGTAACTGAGCACTGGCTTTCTGGTGAAGTGAAGTTTATTGTACAAGTACAACTATAGCATCACAGAGGAAATTCAGTGATTGAGGGTAAGCTGTAAGCCAGCAAAAACACTCACTCGTGAGTAATATGGGGAAATGTTTATTAGTGAGGgttcttaaaatatacagcaAGGGGGGTCCCTGAGATTGTAGGTATGGATAGTTTAACAGATTCACACCAATAGAAGCACCCATCGGGGCAGGCAAATGCATGCTCTGGGGGATAAACACAGTTGCAGACATAGGaggatgttttgtttcataaacacaaaacactccATTCACATACTTTCACCTGgcctccctcccttccccatCGCTTCATTcttttcacttccatttttaTAAACCACATTTAACACTCGGCTTTTATAGACAACAAGTCTGTGTGAATGAAATCAAGTATGtgtacaatttgaaaaaaaaaaaaaaaaagcattttcttttcgATTGTTTTAAATGGATGCAGCATCCCCTTGTGCCGTAATGACTGTTAAATTGTTTCTCGTATCTGACAAGGTTCAAATGTCTTGTTCCCTTTGCtcacaatggaaaaaaacacaattgtggCAACTATTCTGATttgcacaaaacagaaaatagaattaaaaggtaaacattgtgtattcatatttttacatttgactaTCATTATTCCACTGTGTTTCAGATATGGACTAAAGATTTTGCCTCATTATTTGGATTATAAGATGTTAATGTGAAGCTTCTgtatcaaaaatacaaacttgTCTTGTTACAAGTTATTTCTGCATGTGTGGTGATCGAGAGGAACTAATGAAATCTTGACACTTGACACCCCAATCTAGATGGAATACCTTGTCTGAAACATGGGAACAGcttgcatacaaaaaaaaagtagttcGACCAAAAATCAAGGGAACAATCAAAACTCAGACACCCCAATACAGGTTTTAATgtgaacaatatataaaataataaaaaggcatcttttcagtttgaaaagTACAGAAGTTAATGAAGATGGGCTTCATTATGAAACTGGTCCTGATTTGAAGTTAAAAGgttttaagaaagaaaacaaaatggagaatAATCAGTAATAAATGGAGCCTATCTGTATACAACACCATGTGACTTATCCTTTATAGAAAGATGTATGAAGATTAAATTGACTTATTTGCTAGGGTGAAATATGCATTCCTGTCAACTGGTTTGTTCAGCAGTACATTCCTTGGGAGTGCGGGAGTCTTTTCAAATTAAGCACAAGCTGCTAAACAAGGGCTTTGGCTTTTAGTACATGCCCTAGTCCCCAGCTACAGTCTATGCAGGATCAATTTAAATCTGGAGTTTTATTATCCATTCTGGGCTATTGCCAGTCATATGGTGCGATCTGCCGACTTTCTCTGTTGCTTTTACTGAGATTAGATTTTGAATGACATGATAGTTCAGCCTTGGGCTTCCCAACCTCGAGTTTGCTTCCTCTGCATGACTCCTGGCAAGCAAGTGGGGTCTTTGACCTGTGTGTTTCTTGGAGAAGTCACTCAGTATTGCAAATAACAAACATGAGGAGCAGCAACAGAGGTAGACAGAATGTGTTTGTGCAGCTAAAATGCAATTAGATTGTGAAGATGGAGAAATTAATTTGTAGAAAACTTACTGAACCGTGAAACTTTATGATGTTCCATCAGCTAATGGAGTGATTTAATACACTGGCTTAATGTACCTGTATACACAAACCTATGATTCAACATGAAGGGAACTTGGTTTTGTAgaggaaatgtaatttgttccacaatgagaaaagaaaaacaaaacagtgggGATGCTGCAGTATTTTAACTGTCTCGTACTGCATTATACTTTCTCTTAATCAAGTAtttgctaataaaaaataagtgtctTGGCTGGGAGGTTACAATTAAAGTAAAGGAGCTAGGTGactttcacaatgtatttaatgtatgtaaagaATGACTGCAAACAAATGTACTGTCTACCTGTAtgtattacaataaattaaattgcctTTCTTATTATACA

Function

GO: NA

KEGG:

id description
K07888 RAB5B; Ras-related protein Rab-5B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63420 lncRNA upstream 44929 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA upstream 78906 8278853 ~ 8290801 (+) False AMCG00008664
TU63402 lncRNA upstream 100381 8269007 ~ 8269326 (+) True G50698
TU63396 lncRNA upstream 122875 8246577 ~ 8246832 (+) True G50692
TU63372 lncRNA upstream 178922 8189825 ~ 8190785 (+) True G50668
TU63486 lncRNA downstream 188766 8572729 ~ 8589128 (+) True G50757
TU63573 lncRNA downstream 419243 8803206 ~ 8809391 (+) True G50823
TU63641 lncRNA downstream 610573 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 807814 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 808567 9192530 ~ 9192919 (+) True G50930
AMCG00008671 mRNA upstream 5164 8357428 ~ 8364543 (+) True AMCG00008671
AMCG00008664 mRNA upstream 51011 8313415 ~ 8318696 (+) False AMCG00008664
AMCG00008665 mRNA upstream 76190 8276771 ~ 8293517 (+) True AMCG00008665
AMCG00008663 mRNA upstream 95989 8244041 ~ 8273718 (+) True AMCG00008663
AMCG00008656 mRNA upstream 231646 8125999 ~ 8138061 (+) True AMCG00008656
AMCG00008678 mRNA downstream 284638 8668601 ~ 8669729 (+) True AMCG00008678
AMCG00008675 mRNA downstream 296370 8680333 ~ 8693830 (+) True AMCG00008675
AMCG00008677 mRNA downstream 310879 8694842 ~ 8699781 (+) True AMCG00008677
AMCG00008676 mRNA downstream 340110 8724073 ~ 8727731 (+) True AMCG00008676
AMCG00008679 mRNA downstream 380368 8764331 ~ 8771848 (+) True AMCG00008679
TU63407 other upstream 52105 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 429936 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 429936 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1351582 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2626957 5738541 ~ 5742750 (+) True G50243
TU63473 other downstream 66203 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 697864 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 732774 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 926123 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 926123 9310086 ~ 9316151 (+) False AMCG00008710

Expression Profile