RNA id: AMCG00008671


Basic Information

Item Value
RNA id AMCG00008671
length 3086
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00008671
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8357428 ~ 8364543 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGGAGGTGTGTTCCGCCGGGCTTGGGGTCGGGGGCGTGGTTTCGTCTACGCGGGAATTGGCGGGTTCAGGCACTTTTTGTCTCGGGAGGGGAGAGAGCGGGTCAATGCGGCGCTGTCTTTCGGGGTTCAGTTTCGTCCCCCCCCTCATGTCCCCCCTTGGTGTCGGGCGGACCACCTCGAGCAGTCACACGCCAAGATCCGTGTATAATCCCGTTAATCGGACAGTTATCGGGCTTTGATCGGGGGCGACCGACGGTGGGACTTTGCCCGAGAGACtggggtggcggggggggggcgCGACATGCAGTCATTTCAGAAAGTTGAGAAGATCGGAGAGGGGACCTACGGGGTGGTGTACAAGGCAAAGAATAAACTGACAGGCGAGACCGTAGCGCTGAAGAAAATCCGACTGGATACGGAGACAGAGGGGGTACCCAGTACTGCTATACGAGAGATTTCCCTTCTGAAGGAGCTCAGCCACCCCAACATTGTCAAGCTACAAGATGTAATCCACACTGAAAACAAGCTCTACCTGGTGTTTGAGTTCCTCCACCAGGATCTGAAGAAGTTCATGGactcctcctccatctctgGCATCGCACTACCTCTGGTCAAGAGCTACCTGTTCCAGCTGCTGCAGGGCCTGGCATTCTGTCACTCGCACCGGGTTCTGCACCGCGACCTCAAACCACAGAACCTGCTCATCAATGCCCAGGGAGAGATCAAGCTGGCTGACTTCGGGCTGGCCCGGGCGTTTGGGGTGCCAGTGGTGACACTATGGTACCGAGCCCCAGAGATCCTTCTGGGTTGTAAATATTACTCCACAGCAGTAGACGTCTGGAGTCTGGGCTGCATCTTCGCTGAGATGATCACCAGACGAGCCTTGTTTCCTGGTGATTCTGAGATCGACCAGCTGTTCCGGATCTTTCGCACCCTGGGTACGCCGGACGAAGCCTCGTGGCCAGGCGTCACCACTATGCCCGACTATAAGCCCTCCTTCCCTAAGTGGCCACGGCAGGAGATGTCCAAGGTGGTCCCCCCATTAGACGAGGATGGCAGAGACCTGCTGGCACAAATGCTGCACTACGACCCCACCAAGAGGATCTCTGCCAAGAATGCGCTGGTGCACCGTTTCTTCAGAGACGTCACGATGCCCGTGCCTCACCTGCGACTCTGAGGAGCCGACGGACAGGCGGCTGGCGAGGGAAGAGCTCCTCCATATGATCCCAAAGGACATTCCAGTGCCTTTCAGAACTGATCTTTTTTTCCTGGCAAGATCCAACTGGcctattgtattatatatattttttgtattttagaaacaaacataCATCTCAATGGCCATAAAACTCTTATTCCAACTGAGTCTACAGCGCATAGCTCCAGGTTTGGAGACCAAAGCTATAGACCTTGACATTTCAATACTGGTTAATCGCAACTTCCTTCCTCAGTTCTTTTAGCCCATTGTAGGGTGGGGGTTTCTGTAGATCGATGTGGGAGTATAGTTATTATAGTCAGTTTTGATTGAGGGGTTGTGTTTTAAGAGTGTTCTGTAATTGGGATCAAACCAAATAAGAAAAAGTTCATGTTTTGATCATAAGCCATGATGCTGGTGCTTGAACCACGAAACAATCTGGACAACAATATTGTAGCCAAGACCAGGTGAATTCTAATGACTTCAAGACTGGGTTTACAGTCGGAAACCTCAACGTCAATCAAGCCTTTGTAATGAAGTGGGTCTTGAGAATAAATCCAGTAATCAATAAACCCAACAATTGGCAGATTATAATGTATCCTCTTATAATTACATTACCATATATccatttgatgtgttttttaaagcttaACCTACAGACTGAAAAAACTTAtcaactatttttgtttttatgttccccctgcactttttatttattgctgtaaTTATGTAggaatcataaataaatacattaaaatgtattttgttcagtAACCTTGATTTGTCCAGTTTATAGAACTTctggaaatatatacattttaaggttttaatttCTGTAGGTAAGCTTTAATTATCAATTGGAAATAATACCTTAATTGTTATTCAGTATTATAGGATATTTGATAAGCCAGTAGTTGAGTTGTATTGATTGCTTCCTGACATTGGAATTTGTTGGATTGATGGCTTGAATAAATCTGATCTTCAGGTTGTTTAAATTAACCTGTGAGTTTTGTAGGGTCTTAATTATAACCATACTGTTGATATTGAAGGAGtggatggatttgtttttgttgtgatcTCAAGATTAGGCCATAATGAAACTTGGCCTTGTTGGGATATTTAATGCCATTTGTAATCTGGTGGCTCTTACTTCAGGGTTGGTTTAATAAAGcatggagggagagaaagaccAGCATAGCAGGTTTAAAGTGTTTAAGTGGTTCCAAAAGCAGAGGTGAACACTGAAATGTTACTTTTGCTGACATACACAGAGTAGTTCCCTGTGTCTTCCCTTGGAGACTTTTTCCCTAATTCAAAGTCAAACttacaataataaaagcttAATTGTCTGCCTGTCCgccatttttcttaaattattagttattgttttttaacctgCCCTCAGAATGAAGGCCGTTATTAGTTAAGCCACTTGGGAGTCCAATATTGCAAATGCTCAGCATAAAGAGAATCTGCAGGTAACTTTTTAAACCCCCCACCATTCTTTGCATGATGGAAGAGGTAGATCTTTGCTTATCTGGGGGCTGCTACAGCTGTGGTGGAGAAGACTGGTACTggtgctggtttttgttccacctcATTGCTTAATAAAATGAACCCTTTATTTGAGAAACTGGACCACTGGCTTAGTCTCCTGTAGGATGTCCACTGTTTTGCTCTTTGTTAATTTCACATTGCTCCCCACCACACCTTGACTGTCCTGTCTCTTCTAAGATTCCCCCAAGTTGTGATTGCCCCAGTTTGAGGTTCAGCAGGTAACTTAGGGCTGAAATAGACCACATTTAGGAGATCTTGTCCTAGGCTTTCCAGGAGAGTGTGACCAGTAAGGGGTGCTTTGACAAAAAAGCAAGCTAAGGGATAGActcagg

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02206 CDK2; cyclin-dependent kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63420 lncRNA upstream 32650 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA upstream 66627 8278853 ~ 8290801 (+) False AMCG00008664
TU63402 lncRNA upstream 88102 8269007 ~ 8269326 (+) True G50698
TU63396 lncRNA upstream 110596 8246577 ~ 8246832 (+) True G50692
TU63372 lncRNA upstream 166643 8189825 ~ 8190785 (+) True G50668
TU63486 lncRNA downstream 208186 8572729 ~ 8589128 (+) True G50757
TU63573 lncRNA downstream 438663 8803206 ~ 8809391 (+) True G50823
TU63641 lncRNA downstream 629993 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 827234 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 827987 9192530 ~ 9192919 (+) True G50930
AMCG00008664 mRNA upstream 38732 8313415 ~ 8318696 (+) False AMCG00008664
AMCG00008665 mRNA upstream 63911 8276771 ~ 8293517 (+) True AMCG00008665
AMCG00008663 mRNA upstream 83710 8244041 ~ 8273718 (+) True AMCG00008663
AMCG00008656 mRNA upstream 219367 8125999 ~ 8138061 (+) True AMCG00008656
AMCG00008657 mRNA upstream 255774 8100595 ~ 8101654 (+) True AMCG00008657
AMCG00008670 mRNA downstream 5164 8369707 ~ 8383963 (+) True AMCG00008670
AMCG00008678 mRNA downstream 304058 8668601 ~ 8669729 (+) True AMCG00008678
AMCG00008675 mRNA downstream 315790 8680333 ~ 8693830 (+) True AMCG00008675
AMCG00008677 mRNA downstream 330299 8694842 ~ 8699781 (+) True AMCG00008677
AMCG00008676 mRNA downstream 359530 8724073 ~ 8727731 (+) True AMCG00008676
TU63407 other upstream 39826 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 417657 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 417657 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1339303 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 2614678 5738541 ~ 5742750 (+) True G50243
TU63473 other downstream 85623 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 717284 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 752194 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 945543 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 945543 9310086 ~ 9316151 (+) False AMCG00008710

Expression Profile