RNA id: AMCG00008672


Basic Information

Item Value
RNA id AMCG00008672
length 528
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00008672
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8502700 ~ 8504696 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCAGCCATGCTCTTGTGGACCAGCCAATAGAAATTGGGATCCGGCATCTGCCCCCGGATATGCCATTCACAGTGTGGTCCCGTCTGCGCAGTGAGGAAGGGGAACTGTGGGAAGCATTCTCACACTACCGCAGCGACCAGAAGGGCACTGTGATCTCTGGGTACTTCATGTTGAACTTGACATTGTCCCGGGACCAGTCTTTGGGAGGTTCATACAGTGGCCTGGAACCCATGGGTCTGTTCTGGAGTCTGCAGCCTGTGGGGGTAGAGGGCCTGAGgctcaggaaaaaaaatgtggagACTCTATTCACAGTGGAGGTATCTGTGTTCAGTGACCATGTTCGCTCCTCTGACTCCCCAGTGGGCTGCCACTTTGGTCAGGGGCTGGAGGAGGGGGCAGTGCTGGTTGCAGTGAATGTGGAACGCTGGTACATGGCACCAGGAGTGTGCAGGGTGGAGGTGCGAGAGCAGGGGTTGGTGGCCACCCTCTTCTTGCCTGCAGGTGGAACTGGGATGGGGCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63465 lncRNA downstream 118693 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA downstream 118693 8379837 ~ 8384007 (-) True G50740
TU63458 lncRNA downstream 141738 8357450 ~ 8360962 (-) True G50736
TU63427 lncRNA downstream 177925 8278752 ~ 8324775 (-) True G50711
TU63521 lncRNA upstream 69318 8574014 ~ 8574338 (-) True G50784
TU63589 lncRNA upstream 332663 8837359 ~ 8840655 (-) True G50836
TU63686 lncRNA upstream 639648 9144344 ~ 9149938 (-) True G50915
TU63785 lncRNA upstream 871876 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 876055 9380751 ~ 9381754 (-) True G51002
AMCG00008673 mRNA downstream 44746 8456517 ~ 8457954 (-) True AMCG00008673
AMCG00008666 mRNA downstream 146147 8332841 ~ 8356553 (-) True AMCG00008666
AMCG00008667 mRNA downstream 169878 8329899 ~ 8332822 (-) True AMCG00008667
AMCG00008669 mRNA downstream 182403 8316627 ~ 8320297 (-) True AMCG00008669
AMCG00008668 mRNA downstream 209214 8283360 ~ 8293486 (-) True AMCG00008668
AMCG00008674 mRNA upstream 45873 8550569 ~ 8565844 (-) True AMCG00008674
AMCG00008681 mRNA upstream 131104 8635800 ~ 8658560 (-) True AMCG00008681
AMCG00008682 mRNA upstream 197082 8701778 ~ 8717326 (-) True AMCG00008682
AMCG00008680 mRNA upstream 226029 8730725 ~ 8756432 (-) True AMCG00008680
AMCG00008686 mRNA upstream 286567 8791263 ~ 8801324 (-) True AMCG00008686
TU63463 other downstream 131370 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 208346 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 208346 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 228185 8270324 ~ 8274515 (-) True G50712
TU63425 other downstream 233374 8269023 ~ 8269326 (-) True G50710
TU63526 other upstream 152032 8656728 ~ 8660017 (-) True G50788
TU63794 other upstream 886147 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 2068787 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 2172567 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 2172567 10677263 ~ 10700483 (-) True AMCG00008748

Expression Profile