RNA id: AMCG00008681


Basic Information

Item Value
RNA id AMCG00008681
length 897
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00008681
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8635800 ~ 8658560 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCAGATATTTAGGCATCTGCTTGGCAAACGCTGGATTAAACGGTCTTGTTTTTCCAGGCTCAGGAAAAAGAATACAGACACTCCTTTCACAGTGGAGATATCCGTGATCAACGGACACGTTGGCTCCTCTGACTCCCCGGAGGTCTGCCATGTTGGTCAAGAGCTGCAGGAGGGTGCAGTGCTGGCTGTAGTGAATGTGGAGCGCTGGTACATGGCACCAGGAGTGTGCAGGGTGGAGGTGCGAGAGCAAGGGGTGGTGGGCACCCTCTTCTTGCCTGCAGGTCCAGGACCATTCCCTGCTGTGCTGGACATATGTGGGTTGGGTGGGGGACTGAATGAGTACCGGTCTGCCCTCCTGGCTTCTCACGGATTCGTCTCTCTAGCCCTGGCATACTCAGGGCACAAGGAACTGCCTGAGCCACTGCACACCGTGAATGTCGGGGATCGGTACTTCAAGGTAAATGAGAGACGAGGAAATAATCAGAAAACTGCCATGGGGCTGCTGGATAGTCACCCCCAGGTGTGCACTGGCAGGGTGGGTGTGCTGGGCCAGTGCTTCGGGGGGTACCTTGCCTTGCGCATTGCCATGGAGATGCCCAATGTCAATCCCAGGTGTGTGGTCGGAATCTCGGCTTCTGCGGGACTGAAGATCAATGTGACCAAGGAGCGGATGAATGATTTTATGAAAGACCGCGCTCTAGTGGACCAGCCAATAGAAATGCGGATCCAGCATCTGCCACCGGATAAGCCATTCACAATGCGGTCCCGCCTGCGCAGTGAGGACGGGGAGCTGTGGGAAGCATTCTCACACTACCGCAGCGACCAGAAGGGCACTGTGATCTGTGAGTACTTCATTGTGCACTTTACCTGTGCAACCTACTCccaccactag

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63521 lncRNA downstream 61462 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 251793 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA downstream 251793 8379837 ~ 8384007 (-) True G50740
TU63458 lncRNA downstream 274838 8357450 ~ 8360962 (-) True G50736
TU63427 lncRNA downstream 311025 8278752 ~ 8324775 (-) True G50711
TU63589 lncRNA upstream 178799 8837359 ~ 8840655 (-) True G50836
TU63686 lncRNA upstream 485784 9144344 ~ 9149938 (-) True G50915
TU63785 lncRNA upstream 718012 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 722191 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 729698 9388258 ~ 9388608 (-) True G51004
AMCG00008674 mRNA downstream 69956 8550569 ~ 8565844 (-) True AMCG00008674
AMCG00008672 mRNA downstream 131104 8502700 ~ 8504696 (-) True AMCG00008672
AMCG00008673 mRNA downstream 177846 8456517 ~ 8457954 (-) True AMCG00008673
AMCG00008666 mRNA downstream 279247 8332841 ~ 8356553 (-) True AMCG00008666
AMCG00008667 mRNA downstream 302978 8329899 ~ 8332822 (-) True AMCG00008667
AMCG00008682 mRNA upstream 43218 8701778 ~ 8717326 (-) True AMCG00008682
AMCG00008680 mRNA upstream 72165 8730725 ~ 8756432 (-) True AMCG00008680
AMCG00008686 mRNA upstream 132703 8791263 ~ 8801324 (-) True AMCG00008686
AMCG00008687 mRNA upstream 147216 8805776 ~ 8819446 (-) True AMCG00008687
AMCG00008689 mRNA upstream 223934 8882494 ~ 8892523 (-) True AMCG00008689
TU63463 other downstream 264470 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 341446 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 341446 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 361285 8270324 ~ 8274515 (-) True G50712
TU63425 other downstream 366474 8269023 ~ 8269326 (-) True G50710
TU63794 other upstream 732283 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1914923 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 2018703 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 2018703 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 2021718 10680278 ~ 10712485 (-) False G51241

Expression Profile