RNA id: AMCG00008682


Basic Information

Item Value
RNA id AMCG00008682
length 1086
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00008682
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8701778 ~ 8717326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACAGGCCAAGGACCTGGAGCTGTGTGAAGCCTTGAGCTCTTCAGTGCTGCTGCCGGGTTTCAGTGATGTGGATGTGGGTGCCAGTCTGAGTTGGCAGTTCACTGGTAACAAAGGCACCAGAGCCGTTGTGGATTACACCATGAGCAGCGCCGAGCCCACCGTGGACCCACACTACAGAGGCCGCAGCCAATTTTTCCCATCCAATACGTCGGTCCTCCTCCAAGACCTAAAACGCAGTGACCAGGGACTCTACACACTGACGGtacagggagctgcagtcaggaccAAAAATGTCAGCCTGTCTATCCTGCGTCAGTATCCCAATTATGACCCTGTTATCCCTAGTATAGCACCTGGATCCTTGTTGTTCCAGTACCCAGAACTCCACAGAACGGTGACCCTGCTGCGCTGCTCCGTGGTGTTCGGGGACTGGCCGCAGTTCAGCTGGGAGAGAGTGGGAGTCCCTCTTGCCAACGGCACCAAGTATGTGCTGCGAGAGGCAGAGGATGAGAGCAGCCTCACCATCCAGGACCTGCAGGGCACCGACTGCGGTCGCTACACCTGCGTGGTCTCCAGCCCCGTCTCCAGAGAGGAGGACAGCTACGAGTTGGACAGCGGTAAGGCCCTGCAGGCTGGTCTCACTGGCTGGGATGGTGGCGGGGGGCTGGTCTGCAGGCGGGTGGAGTATGAGCAGTTGGTTGTGCCTGTCTGTGCCCTGGTGCCCTGTCTGCTCTTCATGATCGGCTCTGGGATCAGGTatttgATAATGAAGAAGAGGGGGGACTATGAAAAGACTCCAGAGAGAGCCATGTCTGAGCTGGAGAACTCCATGATTTCCATCATCAAGGTGTTTCACAAGTATTCTGGCCATAAGTGCAAGCTGAGGAAGGCGGAGCTAAAGGAGCTGATTAATAATGAGATGACTCACTTCATATTGAAAATCCAGGAGAAGGAGACTTTGGACCAGCTGTTCGGAGACCTGGATCAGAATGGAGACCTGGAGATTGACTTCAAAGAGTTCATCGCCCTGGTTGCCATGGTGACGTCAGCCTGCCACGAACTCTTCACTCCAGCACACCACAGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63521 lncRNA downstream 127440 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 317771 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA downstream 317771 8379837 ~ 8384007 (-) True G50740
TU63458 lncRNA downstream 340816 8357450 ~ 8360962 (-) True G50736
TU63433 lncRNA downstream 418181 8281215 ~ 8283597 (-) False AMCG00008668
TU63589 lncRNA upstream 120033 8837359 ~ 8840655 (-) True G50836
TU63686 lncRNA upstream 427018 9144344 ~ 9149938 (-) True G50915
TU63785 lncRNA upstream 659246 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 663425 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 670932 9388258 ~ 9388608 (-) True G51004
AMCG00008681 mRNA downstream 43218 8635800 ~ 8658560 (-) True AMCG00008681
AMCG00008674 mRNA downstream 135934 8550569 ~ 8565844 (-) True AMCG00008674
AMCG00008672 mRNA downstream 197082 8502700 ~ 8504696 (-) True AMCG00008672
AMCG00008673 mRNA downstream 243824 8456517 ~ 8457954 (-) True AMCG00008673
AMCG00008666 mRNA downstream 345225 8332841 ~ 8356553 (-) True AMCG00008666
AMCG00008680 mRNA upstream 13399 8730725 ~ 8756432 (-) True AMCG00008680
AMCG00008686 mRNA upstream 73937 8791263 ~ 8801324 (-) True AMCG00008686
AMCG00008687 mRNA upstream 88450 8805776 ~ 8819446 (-) True AMCG00008687
AMCG00008689 mRNA upstream 165168 8882494 ~ 8892523 (-) True AMCG00008689
AMCG00008693 mRNA upstream 179411 8896737 ~ 8901751 (-) True AMCG00008693
TU63526 other downstream 41761 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 330448 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 407424 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 407424 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 427263 8270324 ~ 8274515 (-) True G50712
TU63794 other upstream 673517 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1856157 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1959937 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1959937 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1962952 10680278 ~ 10712485 (-) False G51241

Expression Profile