RNA id: AMCG00008684


Basic Information

Item Value
RNA id AMCG00008684
length 2621
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00008684
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8780753 ~ 8784879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACACTTGAGTAATCTGGAGTGCTAAActgcagtggtgtgtgtgtttcacagcATGAACGTGGGGGTGGCGCACAGCGAGGTGAACCCCAACACGCGGGTGATGAACAGTCGGGGGATCTGGCTGGCCTACCTGCTCCTGGTGGCTGTGCTGCATGTGGTCCTGCTCAGCATCCCCTTCTTCAGTGTGCCCCTGGTGTGGACCCTCACCAACGTCATTCACAACCTGGTGATGTACCTGTTCCTGCACACTGTGAAGGGGACCCCCTTCGAGACCCCCGACCAGGGCAAGGCACGCCTGCTCACCCACTGGGAGCAGATGGACTACGGGATCCAGTTCACCTCCTCACGCAAGTTCCTCACCATCTCGCCCATCGTGCTATACATCCTGGCCAGTTTCTACACCAAATACGACGCCACACATTTCCTGGTGAACACGCTTTCCCTGCTTAGCGTGCTGCTGCCCAAACTGCCCCAGTTCCATGGGGTGAGGATTTTCGGGATCaacaaatactaaaaaaaaaaaagaaaaaagtgactGGACTGTTGGGGACCGGACAGGATCTGGACTCCACGGCACTACAGGCTTTGCTTTCCTCAGGTCAGGGGGGCCGGCAGGCAATCATAACACCCTCCGGAGGGTTTTTCCAGTCTGCTGAGGAGGGGTGAATTACTGCGATCTGGACTCTGTGATCTGTGTTACACACTCCCTCCACGTCCTCATTGGagctctctcgctctttctctctctgtaatgCTGAAGGTATGCAGCTTCCTTGTCTCCTGCAATTTCTCTGTCATCACATTTCTCCAGTGGTGACACTATTGTCCTCGCCTGTTGCTGGAATACAATCCTAGCTAGCGCAGATTTTCTGAtaacacaaaaaacaggaaaaaaaacataaacacccTGATATTTTTCCTCGATCCATCTATGGTAAATTTAAAGATTGCTTGCTGTTGGAGTTTTATTGCAGGAGTGCCTTTGTATGGTACAACACCCAGCAAAGTCCAGTCAATCAAAGGATTGCAAGCAGGGGGAGAGATGGgcgagagaatgagagagaatcCCACGGGAACAATGAAGCAGAATTTTTTGACCGCTGTGAAAGAATAGGGAACACGAAAAGCGAAGGATAATGCGCTGACAGCTCAGGTCAGCACAcctcaaaactaaataaatgaataaataaatagctcaGTTGTCTTggtcccccctccccccaccaatCAGATCCCTAAATGATCAGATGCTGACCAGATGTGAGCATGTTAGAGCTCACTCCCTTTTGTGCTGGGTGTTTTTGACACTTCTCAAGAGATCACAACAAAAAGGGCAAGGGTCTGTGTAATATGCAGGAGGGAGTGGGAGAAAAGTGGGGGAGAAGATTAGTGGACAGGAGTGTGAGTGACTGATTGTGAGGGattgatttatcttttttttttatctctccCGCAGCATATTAAATAGCCAGAGGTGTGATTCCTGTCTCCTTTAATCCAAGGAGCATTCCCTAAAAAAACAGCTCCCTATTTCCAATCAGTGCTCCCAATTGTAGGAtttctggctcctgtttttatGTACcgatgttttttctgttgttgatttttaaatgtctctgaACCCCTTGACAAAACTGACAAAGCACCGAAGCAAGAATCGTTTCTGCCCCTGGCCCTCATTTCAAGTTCAGTTCCCTCACTATAGCCtcttctctatttatttatttattcatgcgtTTGCCTATttattctttgtgtttcttttgttttagtcAACATGCATCGACACGTGTATAAAACAACCTGTCCCCGGCTCACATCATTTCACAAAGCCACTGTATAGAGCTTTAAAGAGACAGTACAAAGTGGTGATCCATGCCCTACAATACAAAGCTTCTTGGGAGATCCTTACGACTTGTGCTTTGCATTCTATTCATATTCTTTGGTTGCTTAGACGTAGCGAACTCTTAATCCATATGGAACAAATatcaattttttttacaaattggCCCCTTggaatatatttgaattttttgtttgcaatccatatgtttattttatatagggGAAATGTAAGGAATAAATTCCTACATGAAATATAGGAATTAACTTTCCATGTACTTTCAACACTATACACCTGCTAAAaaatttttttgtatgtttaaaatatatcctgtATTCAAAATCTAGATTTGTTTCGTAGGGGAATTGAAAGTGCTTTCTTCATAGCTGCTTATTTTCAGACCTCAGCCCGTTTGAGGTGTGTCTAGGAAACGGACTTCTGCTCACTGCTCTCATTCACCGTAAGAAACTCCTGCACCCCAATACCTATTTAAACTGCTCCGAACAGGATATGCGTCAGTGAAGCCCAATCATCCGTATACCATGGGAAGGCTGTACAGGTCCTGGACGCTTAAATTCCATACATATGCTGGTCGTTGAAAGTGTTCCCCTGCATGTAAAGAGCACTGCGGCCTAACAATGGTTGCAGCGGAAAATCTTACAGTAAAGGCCACTTTCGTTTGATTCACTGAGTGGTCAAGATGGTTCCAGACTCTCACTTATGAAgaagggtgtgtgtttgtgtatcagtgtggggggggggtgttggcaatcgtat

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63486 lncRNA upstream 191625 8572729 ~ 8589128 (+) True G50757
TU63420 lncRNA upstream 455975 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA upstream 489952 8278853 ~ 8290801 (+) False AMCG00008664
TU63402 lncRNA upstream 511427 8269007 ~ 8269326 (+) True G50698
TU63396 lncRNA upstream 533921 8246577 ~ 8246832 (+) True G50692
TU63573 lncRNA downstream 18327 8803206 ~ 8809391 (+) True G50823
TU63641 lncRNA downstream 209657 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 406898 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 407651 9192530 ~ 9192919 (+) True G50930
TU63705 lncRNA downstream 408136 9193015 ~ 9193685 (+) True G50931
AMCG00008679 mRNA upstream 8905 8764331 ~ 8771848 (+) True AMCG00008679
AMCG00008676 mRNA upstream 53022 8724073 ~ 8727731 (+) True AMCG00008676
AMCG00008677 mRNA upstream 80972 8694842 ~ 8699781 (+) True AMCG00008677
AMCG00008675 mRNA upstream 86923 8680333 ~ 8693830 (+) True AMCG00008675
AMCG00008678 mRNA upstream 111024 8668601 ~ 8669729 (+) True AMCG00008678
AMCG00008683 mRNA downstream 41168 8826047 ~ 8840517 (+) True AMCG00008683
AMCG00008685 mRNA downstream 81400 8866279 ~ 8881168 (+) True AMCG00008685
AMCG00008688 mRNA downstream 118335 8903214 ~ 8913342 (+) True AMCG00008688
AMCG00008696 mRNA downstream 331796 9116675 ~ 9121667 (+) False AMCG00008696
AMCG00008695 mRNA downstream 338362 9123241 ~ 9132238 (+) True AMCG00008695
TU63473 other upstream 114205 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 463151 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 840982 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 840982 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1762628 6957611 ~ 7018125 (+) True G50448
TU63666 other downstream 296948 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 331858 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 525207 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 525207 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 525207 9310086 ~ 9316151 (+) True AMCG00008710

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_13256688_13260380.mRNA True 972 mRNA 0.46 7 CI01000001 13256583 ~ 13260380 (-)