RNA id: AMCG00008685


Basic Information

Item Value
RNA id AMCG00008685
length 2780
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00008685
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8866279 ~ 8881168 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGAGCAGTACATTCTAAACCTGAGATCATTGTGGCAGGGGCTGGGATGGTTAATCCAGcTCTGTGGCCTGGCTCTGATTGTGATTGGTGTGCTGGTCCAGATGAGCCTCCAGAACACCCTCCGCATCACCAACGCCTCTGCATCCGGAGTCCCCATCGTGATCATCTCGGTTGGCGTGGTGATCTTCTTCATCGCCTTTTTTGGCTGTTGCGGGGCCTGGAAGGAGAGTGCCTGCATGGTCACCATGtTCGCTATTCTCTTGACCCTCATTATCCTGGTTGAAGTGGCTGCTGCCATCGCTGGATACATCTTCAAGGACAAGGTCCGAGGGATCTTGACCGAAAGTTTTAGGGATCTGGTAAAGACATACCCTGATAAACCGGAAAACAAGAAGGTTATGGATGACATGCAGAGTGAATTCCACTGCTGTGGAGCCCTGAACGCCTCAGACTGGCAGAACAACTCTGTGCCCGACTCCTGCTGCAAGAACGTGACTCTGGACTGTGGGAAGAACGCACAGCACACCGACAAGATCTACAGCACGGGCTGTGTGGTGGTCCTGGAAAACTGGATAAAGAAGAACTTGGTGATTGTGATTGGAGTGGCTTTGGGCATCGCCTTCTTCGAGATCCTGGGCGTCGTGTTTGCCTGCATGCTCATGAAGGCCATCCGCAGCGGCTACGAGGTCATGTAGGGGCGCTGTGTGCCCCGGGCCCCCgaacacaacacaatgtgcCAGCATTCTTGAAAACTTCACAAAGTCCAATCCCTGCTACATTATTTCACAAAGCAGAAATACCATGttgctttttatacattttccccccccccccccccccccttcccttttGTGCAATCACACTCTTTTCTGTCTTTACTTCTGTATCATTAAGATTGTAAATTAAGCAAAATTGTACCTGGAGAAATGGAGCGGGAGTCTGTGTGGGGGGTAGTTAATTGTCTTGCATCTTTATGGGGTTCTGTAATTATCTGCTTTTGAATGGAATAGACTATATTGGAGAACCAGCCTTATTAAACCACCAGTAGATATTCTCAGGTTCTTGCCTTGCTCTTCtagatttttgcattttatatttttattgtatcttGAGTTCCCTTACTGCTGTCTGAGTTGCAGAGTCCCTGTGATCTGAATTGTTCTATTgtttaattggaaataaaattTGAAACATCCAATATCCGGATCGGCAGTGTGGGTTTGTACCGGACATGGCTGGTACACCTGGCCAGGGTAGGATCCCAAACTTCCCAGGCTGGCTTCCACTCCCATTTTGAATTTTAGGGAGAACAACATGAATACAGCCTCTATTTATTACCATCTGTGAAACATAGGTGATTGATTCTAAAGGGGTATAGTTCTGCAAAGAAAGGCTTTCTTAATAAAAATGGTCATCCCACATGGGAAGTGGCTCAGTGGAACAGCTGTGTGAGAGACAAGGTCATTGTTCAACTAGTTTTTCCTTCTGCTGCAGGTCCTCAAATGACCACCTTTGAAATGTTGAAACCTGCCATTTTAGAGGACTTCTCCCTTGCACCTTtacactgttgtgtttgtgtgggtggtttctgtatttttcctaTGACGTGAGTTGCTAAAAGTAGGTCCTCACCCCGGTCTCTTTCTGACTGAAGGGGGAACTTAAAATACAGGTGCTCAACAGTAAAGTACTTAAGATTAGGATTTCAGTTTGCCTGAGGCTGCAAAGATTCATAAACGCAAACACGGCAgcctacattaaaataaaatattccctGAAATACTTGTTCATGGTTTTACATGAAATACAGTCCCTGAGTTTCATTCCTCTGCAGAATGTGCTCCCATTccaaactggtatctgtggtAGTTCTCCATGTTGCAAAAGAACAGAGCCAAATTCAAGTGTGTGGGGTTTGAGGGTGGGGGTCAGGCTGTGGTCCAACACTTGGATCTTTTGCTGGACTGAAACAACTTTTGAATGCACAGCCCTGAAAAGtgatcaaatgcatttatatgttgctgctgccatctagtggttTAGATTGGTCACAGCCACATTTGCTGAAAGGTGCATTTTGTAGCTCAATGTTCAATGCAGTTTTAAATGGGacataaagcattttttatGTTCTAAACCACAAGCTGTGGTGCTTAAATGGAGACACGGTCTAAAGATTGACTAATTTAAGCCAATAAATGTACCCTGGACTGGAGCTCCTTCCAAAACCAGGGCTGAAGGGTCTGGTGCTGAGAAGTCTAACACCtgtaaacagaataaataagcTTGGCAGCTGTGTAGGAGAAGGATCATGGTGTCTTTTACTACACAAAGAGGATTCCTTGGTCAATAATAAAACTTATGCCCAGTTTGAGAAAGGGGTGACTGGTACCCGTGGTGTCTGAACCCTGTTGAAGGACGGGGCTCCAGGAGCACAGCTGAGCAACGTATATACATGCTGCCATGGCAATCAAATACTCTCGGGATGTGTGGAGATCAGAGCCGTTCACTGACCAGAGCAGGGCTGGCACGCTGCGTCTGTACACCCGTCCACATGCGAGCAGATCAGAGTCGGGAAGAGCTCCATGTGGCTTGGGGGAAATTTGTTACAAAGTATTGTGGTGTGATTTGCTCTTGTGTGGCACAGTGTGCCACTTGCCAGCCTGCAATGCACTTGGGGGGAGAGGCACAGATGTTTGATCTGGGCAGGCTGATTTCCTACTTGCCAGGGTGGAAAAAACTTGACatgaccaaaaaataaatttctATGATTTTG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06497 CD63, MLA1, TSPAN30; CD63 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63573 lncRNA upstream 56888 8803206 ~ 8809391 (+) True G50823
TU63486 lncRNA upstream 277151 8572729 ~ 8589128 (+) True G50757
TU63420 lncRNA upstream 541501 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA upstream 575478 8278853 ~ 8290801 (+) False AMCG00008664
TU63402 lncRNA upstream 596953 8269007 ~ 8269326 (+) True G50698
TU63641 lncRNA downstream 113368 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 310609 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 311362 9192530 ~ 9192919 (+) True G50930
TU63705 lncRNA downstream 311847 9193015 ~ 9193685 (+) True G50931
TU63706 lncRNA downstream 313236 9194404 ~ 9194638 (+) True G50932
AMCG00008683 mRNA upstream 25762 8826047 ~ 8840517 (+) True AMCG00008683
AMCG00008684 mRNA upstream 81400 8780753 ~ 8784879 (+) True AMCG00008684
AMCG00008679 mRNA upstream 94431 8764331 ~ 8771848 (+) True AMCG00008679
AMCG00008676 mRNA upstream 138548 8724073 ~ 8727731 (+) True AMCG00008676
AMCG00008677 mRNA upstream 166498 8694842 ~ 8699781 (+) True AMCG00008677
AMCG00008688 mRNA downstream 22046 8903214 ~ 8913342 (+) True AMCG00008688
AMCG00008696 mRNA downstream 235507 9116675 ~ 9121667 (+) False AMCG00008696
AMCG00008695 mRNA downstream 242073 9123241 ~ 9132238 (+) True AMCG00008695
AMCG00008701 mRNA downstream 294452 9175620 ~ 9184530 (+) True AMCG00008701
AMCG00008700 mRNA downstream 389194 9270362 ~ 9282607 (+) True AMCG00008700
TU63473 other upstream 199731 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 548677 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 926508 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 926508 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1848154 6957611 ~ 7018125 (+) True G50448
TU63666 other downstream 200659 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 235569 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 428918 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 428918 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 428918 9310086 ~ 9316151 (+) True AMCG00008710

Expression Profile