RNA id: AMCG00008686


Basic Information

Item Value
RNA id AMCG00008686
length 2283
RNA type mRNA
GC content 0.65
exon number 7
gene id AMCG00008686
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8791263 ~ 8801324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATAAGAAGGCTCGCAATGCCAGCAAGAGCACCCTAGCAGAGGAGCCACTGCCGactggtgggggggtgggcaaTGGAGTGTGCCATGGCCTTTCCCCCCTTCCCCACTCGCTGTGCACTGAACCCTCCCCAGAGCCAGGGGACGGGACAGACTCTCAGGCCCAGCACCAGCAGCCATCGGTGACGGTGGAGACCTGCAGGGCCCAGGGGGTGCTCTGGGAGGAGACGGCAAGGGAGGGCCTGGCTTCCAAGGCCTATCTGGATGACTTCCCGGAAACAGAGCGGTCAAAGCAGGCCGACGCCTTGAAGGGCCCGTTACCCAATGGGGTCCCAGAGGGCGGGGTGCAAGCTGGGGATCGGAGCCCAGTTTCGGGAGGGGATCTGGAACCAAAGTCTCTCAGTGAGCCCCCTATTTGCGAACGCCTTCCTTCTGGTGAGGTGGATGGAGGGAGTGTGGAAGGGGACGGCAAAGAACATAAAGAGCTGTCAGAGGAGGAATCGGAGAAGGagggggaagaagaagaagaggaggaagaggaggaggggggacgAGAGGCAAGGGTGAATGGGCTCTCGGGCCCTCAACGAGCAGGGAAGAGGCAGaaaggcagggagagggagcggCCAGGCCTGGGGGAGTCATCCTCTTCCAAGGCGGCGGCGTCCTCGGGCGGGAGGCATAAGCAGGCCCGACGCAGGAACAAtggccaccaccaccaccaccacagccAGCAGGGCCGTTCCCGGGGCCCCTCGGGGTGGGGAGGCCTGCCACTAAGCCGTGAGCTGCTGTGGGACTGGGTGTGGCCGCGGGGAGAAGCCTGCCTGCGCATACTGGTGGACCTGATTGTGCTGTTCGCCCATCGCTgcggggagggggtggaggtcGCAGGGACCCTGCTCTACATCTGCGGCTCCCAACTGCTCTGCAAAGCTACGGACATTGGCACTCTCCGGCGGGAAGCCGGGCTCTGGGGGAGTGTCCTAGCTGAGAGGGGCCGGTGGACTGTGGGGGCCCTGCGGGACATGGGGCGTGGCCTGGCTAGTGGAGGGCGCCGTGTCCTGGGCACCCTCCTCACGCTGCTCTGCCTGGCTCTCCTGTGTGCCACGGGGGGCCTGCGCTGGGCTGGGGGGGCACTGGAGAGGCTGTGCGGGGGCAGGCTGGGCCGGGGCTGGGAGGCACTCTGGCAGAGCAGAGCCTGGGCGATACTGGTGGGGGGTTGGGCGAAATTCAGGACTGCACTGAGGTGGGGCACCCTCTCTTcatccccctcctcctccttttcatCACACTCTGCCCCAGATTCCCCAGGCGGAACTGGACGCTGCCAGCCTggggaggagctggagaggctgctggcgctggcCCAGCTGCCTGAGGAGGAGCTGGACCCCTTCAAGGTGCTGGGAGTGGAGACCAGCGCCACCGACGGCGAGCTGAAGAGAGCATACCGGCAGCTGGCAGTGCTGGTCCACCCAGACAAGAACAAGCACCCGGGGGCTGGGGAGGCTTTCAAGGTCCTGAGAGCTGCCTGGGACATCGTGAGCAACCCAGACCTCCGTCGGGAGTACGATCTGAAGCGCATGGCAGAGACAGAGTTATCCAAGTCGATGAATGAATTCCTCAGCAAACTGCAAGATGACCTGAAGGAGGCGATGAACACCATGATGTGCAGCAAGTGTGAGGGCAAACACAAGCGCTTTGAGATGGAGCGGGAGCCCAGCCAGGCCCGGTTCTGTGCTGAGTGCAACAAGAGACACAGCGCTGAAGAGGGGGACTTCTGGGCCGAGTCCAGCCTGCTGGGCCTGCGCATCACCTACTTTGCCCTCATGGATGGCAAGGTCTACGACATTACAGAGTGGGCAGGCTGCCAGAGGATTGGCATTTCCCCAGACACTCACCGGGTGCCCTATCACATCTCCTTCGGCTCCAAGACCAACAGTAGCACCGGCCGGCACAGGACCCCCTCGGAGGGccccccaggaccaggaccaggaccaggaccaggaccaggaccCAGCCCCGGCCCCGGCTCGGCGGCTGACCTGCAGGACTTCTTTAACCGCATCTTCCAGGGTGCCCCCAACGGAATGGCCAATGGGGGCTTCTTCCCTCCACCGCCACCCGCCTCCTACCCAGGGGCACCGGGCGGTCCCAACCCCTTCAGTTCTGCCAGCACCTCGACCTCCAACCTCCCTACCTCCCCGAATCCCGGCCCTGGCTTCCCCCCAGGACCGCTGGTGCCAATGATCCTGGGCAGGGCTGAGTGCCAGTGCTGA

Function

GO: NA

KEGG:

id description
K09534 DNAJC14; DnaJ homolog subfamily C member 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63521 lncRNA downstream 216925 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 407256 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA downstream 407256 8379837 ~ 8384007 (-) True G50740
TU63458 lncRNA downstream 430301 8357450 ~ 8360962 (-) True G50736
TU63433 lncRNA downstream 507666 8281215 ~ 8283597 (-) False AMCG00008668
TU63589 lncRNA upstream 36035 8837359 ~ 8840655 (-) True G50836
TU63686 lncRNA upstream 343020 9144344 ~ 9149938 (-) True G50915
TU63785 lncRNA upstream 575248 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 579427 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 586934 9388258 ~ 9388608 (-) True G51004
AMCG00008680 mRNA downstream 34831 8730725 ~ 8756432 (-) True AMCG00008680
AMCG00008682 mRNA downstream 73937 8701778 ~ 8717326 (-) True AMCG00008682
AMCG00008681 mRNA downstream 132703 8635800 ~ 8658560 (-) True AMCG00008681
AMCG00008674 mRNA downstream 225419 8550569 ~ 8565844 (-) True AMCG00008674
AMCG00008672 mRNA downstream 286567 8502700 ~ 8504696 (-) True AMCG00008672
AMCG00008687 mRNA upstream 4452 8805776 ~ 8819446 (-) True AMCG00008687
AMCG00008689 mRNA upstream 81170 8882494 ~ 8892523 (-) True AMCG00008689
AMCG00008693 mRNA upstream 95413 8896737 ~ 8901751 (-) True AMCG00008693
AMCG00008691 mRNA upstream 112614 8913938 ~ 8916096 (-) True AMCG00008691
AMCG00008690 mRNA upstream 140176 8941500 ~ 8941823 (-) True AMCG00008690
TU63526 other downstream 131246 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 419933 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 496909 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 496909 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 516748 8270324 ~ 8274515 (-) True G50712
TU63794 other upstream 589519 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1772159 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1875939 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1875939 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1878954 10680278 ~ 10712485 (-) False G51241

Expression Profile