RNA id: AMCG00008688


Basic Information

Item Value
RNA id AMCG00008688
length 1376
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00008688
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8903214 ~ 8913342 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTTAATACAGACTCAAATTCAACTCCTGCACAGCCGTGTTGCTTTTTGGTTGGAATCGCTTATCACAAAGCACACAAATTACGCCTAAAGCATTATTATGTCCCCCTACACAATTGGCTATACCGTCACGAATTAATTTCATTAGACATTAGTCACGGCTCGGACAGGTTGATGTAGGGACgctgtgtgtGTAACTGGGCTGGTGACGCTGTGCATCCGAGATGGCTTCCTATCACTTGGGATCAAGTTGCCTCGCTGAGAAGAATACTATTGGGGGTTCTGCACGTGGCTGGGACGAAGAGACTGAAGGCGAGGATAATCCAGAAAAGTTGCTCCAGTGTCCCTATGACAAGAATCACCTGATCAGAGCCTGTCGCTTCCCCTACCATCTCATCAAGTGCAGCAAGAACCATCCCAAGCTGGCCAGTGAGCTGAAGACCTGCCCCTTCAATGCTCGCCACCTAATGCCCAAAAATGAGCTTTCCCACCACATGACCAACTGTGCGGATCGGTGCAATATCCAGTCTGACAAAGCGGGCAGCGCAGAGGTGCCGTGTAAGTGGCAGGTGCCTCTCAGCACTTGGCAGTGCCCTAACAATGAAGAAGACTGGGACAAAGATGCAGACGATGTTCCTCCACAGCCGTTCATCTGGGGGGTGTCCACTTCCACCATCAACAAAATAAACGAGGACAAGAGACTGTGGAAATGCCATGGACACGGATGGGCAtaaaccttttaattatttttttagatttgtttttttgtacttttaattaCTATAATCTCCAGTTCAGATCAATAAAAAGTCAGTATGTCATCTTTGTTTAGACTAGGACTCttactttgttttgggggggaatCTAAGTGGTTAGCTAGCCCTGTTATGTTGGAGCCTGTGTATGTGACCAGAAAGCCCCTCCGCTCCTAGTAGAATATGGAAAGCCTGATTTTACTTGTACCTGCAAGTAGGTGACTTGAGCTGCTGTTCttatacttttaataaaaatcaattggGGGGGGAAAAAGTGGTTTGTCTTGAGCCTTTTTTTCTCGCCTCCTGTGTTTGAAGTATCAGATGGCACCCAACCTATAAAAATCTAGAATAATACACCTTTGccactttttaaatagattgTTTTATGGCTGGTTGTGATCTGATCTTTTACTAACTGAATCCCTAATTACTGAACTCCTGAGTGGAGTGAGGAGCTGGAACTGGATTTCATAGTTATCTTAATGTATGCACAGCAGGGCTCTGAATTTGTGCAGGGCTGTAGTGTACCCTGGccttttaattgaatttcaccCTTCACTATAGGCTTCTCTACAGAGTAACACTACAGTTAGTGTTGAATCAAACCTCAAATGTTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63573 lncRNA upstream 93823 8803206 ~ 8809391 (+) True G50823
TU63486 lncRNA upstream 314086 8572729 ~ 8589128 (+) True G50757
TU63420 lncRNA upstream 578436 8278853 ~ 8324778 (+) False AMCG00008664
TU63421 lncRNA upstream 612413 8278853 ~ 8290801 (+) False AMCG00008664
TU63402 lncRNA upstream 633888 8269007 ~ 8269326 (+) True G50698
TU63641 lncRNA downstream 81194 8994536 ~ 8994903 (+) True G50878
TU63703 lncRNA downstream 278435 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 279188 9192530 ~ 9192919 (+) True G50930
TU63705 lncRNA downstream 279673 9193015 ~ 9193685 (+) True G50931
TU63706 lncRNA downstream 281062 9194404 ~ 9194638 (+) True G50932
AMCG00008685 mRNA upstream 22046 8866279 ~ 8881168 (+) True AMCG00008685
AMCG00008683 mRNA upstream 62697 8826047 ~ 8840517 (+) True AMCG00008683
AMCG00008684 mRNA upstream 118335 8780753 ~ 8784879 (+) True AMCG00008684
AMCG00008679 mRNA upstream 131366 8764331 ~ 8771848 (+) True AMCG00008679
AMCG00008676 mRNA upstream 175483 8724073 ~ 8727731 (+) True AMCG00008676
AMCG00008696 mRNA downstream 203333 9116675 ~ 9121667 (+) False AMCG00008696
AMCG00008695 mRNA downstream 209899 9123241 ~ 9132238 (+) True AMCG00008695
AMCG00008701 mRNA downstream 262278 9175620 ~ 9184530 (+) True AMCG00008701
AMCG00008700 mRNA downstream 357020 9270362 ~ 9282607 (+) True AMCG00008700
AMCG00008706 mRNA downstream 377346 9290688 ~ 9309599 (+) True AMCG00008706
TU63473 other upstream 236666 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 585612 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 963443 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 963443 7933829 ~ 7939771 (+) False G50583
TU63090 other upstream 1885089 6957611 ~ 7018125 (+) True G50448
TU63666 other downstream 168485 9081827 ~ 9087967 (+) True G50900
TU63657 other downstream 203395 9116737 ~ 9122812 (+) True AMCG00008696
TU63743 other downstream 396744 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 396744 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 396744 9310086 ~ 9316151 (+) True AMCG00008710

Expression Profile