RNA id: AMCG00008694


Basic Information

Item Value
RNA id AMCG00008694
length 1878
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00008694
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9019960 ~ 9035943 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgtttgtttgtttgtttgtttgcactgGGTGGGAAACACGGTGGGCTGCAAAAGCTTTCATCCCAGTCggaaatatttgaaaaagagaaaataacgCACACTTTCTTTCGATAACCAGAAAATACACAACATCATCACCACTGGATCTGATCAGCGCTGGGCTCCTTAAACAGAACTATAACCAATACACCCAGGTGAAATTGCACACataaaaacaactacaacaacaagaacacaaGCTCACATCACAAATGTGTGTAGCCGGGTCTGCAGAGGGAAGACACACAAAGGAACAATTGAAATGAGCGAGAGAGACGCCTCTTCTTCTCCCCGCCCATTGAATACAAAGTTGCGTGCTGGTGCGGTGCAGCGGCAGTTGTGAGGCACCGGCTCGGCGCGGAGCGGAGCAGCGGCAGTGTGCGCCTCATTTCCCCGCAAGAGCCCGAGTGAGTGTGCGTGACTCTGCTCACCGGCGCGCAGTCATTTCACTCGCCTCGGACCTGTACTATGAAGAACATGACGTTTCGGAGAATCAAGAAGCTCAACTCCAACGACCCGGAGTCCACGAGTGCGCCTCAGGACAGCGGGGACATCTACCAGTCCTCCGCCTCGGACACGTACCGGACCCTGGAGCTGTCCAAGAAGAGCAGCTCGGAGGTTTACACTTACAGGACGCTCGCTTACTCCGGCGGGACGCTGCCCAGGAACTACAGAAAGGGCGCGCCTCAGAAATGGAAATCCCTGACGCAGTCCCCCGGCCAACAAAGGAAAATCATCATCCTGGAGAAAGAGGACCAGGAGACCTTTGGGTTTGAAATCCAGACCTATGGACTTCATCACCAGAATGAGAACTCTGTGGAAATGTGCACTTTCGTGTGCAAGGTGCACCCTAACAGCCCAGCACATCAAGCTGGACTCAAAGTGGGAGACACCATTGCCAGTGTGAACGATGCCAAGGTGGAGGGGTTCAGACACAAGGAGATCGTCCAGCTCATCAGGTCTTCAGGGAACACGATCAGATTGGAGACTGTTTTCGGGGATTCAATCAGAAAAGCAGAACTGGAGACCAGACTACAGTATTTAAAGCAAACCTTGCATGAGAAGTGGGAAGAGTATAGGTCTCTGATGGTGCAGGAACAGAGACTAGTTCGTGGCATCGTGATGAACAACCCCTCGGACTATGAGACACTCGAGTCGGTCCATGCGTGCATCTACGGGGGCAGCTCGGCCTCCCCTAGCCCGGCCGCCCACCGCCAGGTCTACACCACCGGCAGCACTTGCAGTAGCGCCAGCTACCTGAGCACCGCCACCGACGACGCCGAGGACCCCCTGTACCAAACCTGTCTGTACGACAGCAACGCCAACAACTCGGCTGAGGTGAAGAGTGCCAGGCCAACTGGGGACCTCCTGCCCCCTGCCAAGACGCATCTGACCCGCAGCGCCAGCACTCGCAGCTACCAGAGACCACCCACGGGCACCTGGGATAAATCGGGCAGTGGCCAGGGCAGCTACGGGTCCTTGCCGCGCAAGAGCAAGCAGAAAAGCTTCCGTAGGAGACTGTTAAAATTCATCCCAGGACTCAACCGCTctctggaggaagaggaaagcAAGCTATAGAACACAGAACTGTTCTTCTGTGgccttttgtatttcattgtgatttcttaagttatttatttattttgtttttatctgtaaataCTAGTTTTTTGGCGATTCGTTATGTTCTGGTTTTGTAAGTATGCTTCCCAATGGCAGACATTTTGGCCTGTCTGGCCTATTTTGgcttagttttctttttttgtacttCTGAAAATTATGAATAAGTTCCTCTGTTCCTCAGCAAACTTGTAAAAATAAACGCCTGGAATTTGAA

Function

GO: NA

KEGG:

id description
K24053 GRASP; general receptor for phosphoinositides 1-associated scaffold protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63589 lncRNA downstream 179305 8837359 ~ 8840655 (-) True G50836
TU63521 lncRNA downstream 445622 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 635953 8372506 ~ 8384007 (-) False G50740
TU63464 lncRNA downstream 635953 8379837 ~ 8384007 (-) True G50740
TU63458 lncRNA downstream 658998 8357450 ~ 8360962 (-) True G50736
TU63686 lncRNA upstream 108401 9144344 ~ 9149938 (-) True G50915
TU63785 lncRNA upstream 340629 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 344808 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 352315 9388258 ~ 9388608 (-) True G51004
TU63791 lncRNA upstream 352881 9388824 ~ 9389048 (-) True G51005
AMCG00008692 mRNA downstream 52076 8958278 ~ 8967884 (-) True AMCG00008692
AMCG00008690 mRNA downstream 78137 8941500 ~ 8941823 (-) True AMCG00008690
AMCG00008691 mRNA downstream 103864 8913938 ~ 8916096 (-) True AMCG00008691
AMCG00008693 mRNA downstream 118209 8896737 ~ 8901751 (-) True AMCG00008693
AMCG00008689 mRNA downstream 127437 8882494 ~ 8892523 (-) True AMCG00008689
AMCG00008699 mRNA upstream 990 9036933 ~ 9067430 (-) True AMCG00008699
AMCG00008697 mRNA upstream 45884 9081827 ~ 9102880 (-) True AMCG00008697
AMCG00008698 mRNA upstream 114117 9150060 ~ 9170282 (-) True AMCG00008698
AMCG00008705 mRNA upstream 161490 9197433 ~ 9205392 (-) True AMCG00008705
AMCG00008702 mRNA upstream 187171 9223114 ~ 9229459 (-) True AMCG00008702
TU63526 other downstream 359943 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 648630 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 725606 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 725606 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 745445 8270324 ~ 8274515 (-) True G50712
TU63794 other upstream 354900 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1537540 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1641320 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1641320 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1644335 10680278 ~ 10712485 (-) False G51241

Expression Profile