RNA id: AMCG00008695


Basic Information

Item Value
RNA id AMCG00008695
length 2446
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00008695
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9123241 ~ 9132238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTAATCCCCGTCGAATCTGCAGGGCTATACATTCCAGAGTTTCTGAAAAATCAAATTTGAAGTTTATCTTCAGTCAGAGCTGGGTGACTTGGCGTCCCAATCCTCTAAAGTGAGATAAGGATCCTACGGCCCATCTTTACTTGCAAAACAAAGCATGTCAATAAGCACCAGGCCTGCGAATTGCGGCAATTCAATTAAGCTCTTATCGGTTCTCAGGGGTCGGCCAAATGTGTGTTTGCAGATCATTGTTCTGCACAACATTAACTCGCCTGCAGCTCCGAAACCACTTCGCTTTACAGACGGTTTCCCAAAGCAGTGAGATGGAAATGGTCCGAGAAGGTTGACCAGAACAGGACGGGAAGTGACTGGCTTTGTGGGCTGGTGGTCACGCCCACTCTCCTGCTCTGCCTCGTCATTGGTCCCGTTGGGGGTCAGGAATTGGTTAGCCCCGCCCCTGTGGCGCAGCTGCACCAATGGGGAGTGGCAGAGGGGGTGTGGAAGGCCAATGGGGAGGAGCTTCTGAGTTTGGAGGAGGCGCTAAAAGAGCAGggTTATTACCTGAGCCAGCTGTTCCTGCAATACGGGGAGAATGGTACTCTGTCTTATGAGGGACTGAAGGCCTTGCTGGGCAGCCTTGGCCTGGGGGAAGTCAGCATCCTGGAGATCAGACATCCAGGACACCGGCACGAGCCTCCCCTGGCCCCCACAGTGCAGCCAGGGGACCGGGAGCACAACCCCCACCACACAGAGCACCGTGGCCCCTTGCCATCACCCCCACAAAGGAGGCGTCTATCTGAGGGAGATGACCAGGCGATGGGATCATGGGAGCAGCCCCTGGATAGCTCCCCGGAAAGGACAACCGTGGTGCTCCAAAGTATCCCAGAGCACCCTGGGAAACCTCCAGTCCTCCAGCCTGAAGAGGGGCGCAAGTTGGAAATCCCCTTGGTTTTCAATCACCCTACTGAGAATCATCTCCACGGCAATtgtctaAATGTTACTCAGCTCCTGGGGAATTTTGGCCTGAGGAAGGAGTCCCATATCACCCCGGCCCACTTCACCTTTCTGTGCCCCGCCCTGCTCTACCAGATTGACAGCCGTGTCTGCATCCGCCACCAGCAGGAGGGCCAGGGGCCAGGGAAGGAGAGGGGCGTGTCTTTCCTCATGGCTCTGGGCTGGGGCTCCCTGGCTCTTACCGTCATTAGCCTGCCCTCCCTCCTGGCACTGGGCACTGTGCCCCTCCTGCCCTCCCACTGTCTCCACACCCTGCTGTGCCCTCTCGCTGCGCTGGCCGTGGGCACCCTGTGCGGGGACGCCCTGCTTCACCTGCTGCCCCATGCTGGGAAGGGATCACACGCAGAGCTGCAGGACGCTGTGCTGAAAGGGCTGTGTGTGCTGGGGGGGCTGTACCTCTTCTTCCTCCGAAGGAAGAGAGAGCGAGCCAGTTCTCTCCAGGAGGGGGCGACCGAGAGGGAATTGACAGCTTTGCAGGGCGCACCTCCACCTGACCAATCAGCTTCCCGTGATGGTGGGGGCCGGGCCGAGCAGGGCCAAACCCACTCGCATGGCGACCCCGCCCAGGTGCATGCTGGGATTAGCAGCCTGGTGTGGATGGTGATCATGGGTGATGGGATTCACAACCTGATCGATGGACTGGCCATTGggactGCCTTCTCTCAGAGCCTGGCGGGGGGCCTCAGTACCACAGTTGCTGTGTTCTGCCATGAGCTGCCCCACGAACTGGGTGACCTGGCGGTGCTGCTTTCGGCCGGCTGGCCTGTGCGCCGCGTGCTGCTGTTCAGTGTGCTGTCTGCAGGCCTGGGATTTCTGGGCCTGCTGGGGGGGACCCTGCTCAGCCAGCACTCCACAGAGCTCTCCACCTGGCTGTTCACCCTCACCGCCGGGGTCTTCCTCTATGTGGCTCTGACTGACATGATGCCTGAGATGCTCCGTGGATCCCCAGGTCCGGTGGGAGCCCTGACTCGTCTGCTCCTGCAACACCTTGGGCTCCTGATGGGGGGCGCCATCATGCTGTGCATCGCTCTGCTGGAGGACCAGATCACCCTCCTTCTGGCTTGAGCTCCGCCTacagtgcccccccacccctggacTCCTGGTGGTCTTATTCCAACCTTGTCACTTGTCGTCTGCTCTTAAACAAGGTGGAGATGGGTCAGGTCAAGGAGGGGACAACTGAGGCCAGAGTGAAAAACAGCCAGCAGACATGGGgtgtttttgtgtctgtgcATAACCCAAACAGTACTTCAATTGGTGGGGGATCAGATGCAATACTGCACAATGCCTCTGCACAGCCTGGACTAATGGCGGCTAAGTCTCCTAATTTTAAACTCAGTATTTATTGTACAGAATGGATTAGGatttattaatgtgtaaatgtggtGAGAACAtgactattttgtttttaattaaagtttttaaaatggTCA

Function

GO: NA

KEGG:

id description
K14711 SLC39A5, ZIP5; solute carrier family 39 (zinc transporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63641 lncRNA upstream 128338 8994536 ~ 8994903 (+) True G50878
TU63573 lncRNA upstream 313850 8803206 ~ 8809391 (+) True G50823
TU63486 lncRNA upstream 534113 8572729 ~ 8589128 (+) True G50757
TU63420 lncRNA upstream 798463 8278853 ~ 8324778 (+) False AMCG00008664
TU63703 lncRNA downstream 59539 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 60292 9192530 ~ 9192919 (+) True G50930
TU63705 lncRNA downstream 60777 9193015 ~ 9193685 (+) True G50931
TU63706 lncRNA downstream 62166 9194404 ~ 9194638 (+) True G50932
TU63764 lncRNA downstream 220740 9352978 ~ 9354405 (+) True G50983
AMCG00008696 mRNA upstream 1574 9116675 ~ 9121667 (+) False AMCG00008696
AMCG00008688 mRNA upstream 209899 8903214 ~ 8913342 (+) True AMCG00008688
AMCG00008685 mRNA upstream 242073 8866279 ~ 8881168 (+) True AMCG00008685
AMCG00008683 mRNA upstream 282724 8826047 ~ 8840517 (+) True AMCG00008683
AMCG00008684 mRNA upstream 338362 8780753 ~ 8784879 (+) True AMCG00008684
AMCG00008701 mRNA downstream 43382 9175620 ~ 9184530 (+) True AMCG00008701
AMCG00008700 mRNA downstream 138124 9270362 ~ 9282607 (+) True AMCG00008700
AMCG00008706 mRNA downstream 158450 9290688 ~ 9309599 (+) True AMCG00008706
AMCG00008710 mRNA downstream 180989 9313227 ~ 9315306 (+) False AMCG00008710
AMCG00008708 mRNA downstream 206593 9338831 ~ 9350517 (+) True AMCG00008708
TU63657 other upstream 429 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 35274 9081827 ~ 9087967 (+) True G50900
TU63473 other upstream 456693 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 805639 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 1183470 7933829 ~ 7939771 (+) True G50583
TU63743 other downstream 177848 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 177848 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 177848 9310086 ~ 9316151 (+) True AMCG00008710
TU63913 other downstream 797240 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 797240 9929478 ~ 9931081 (+) False AMCG00008727

Expression Profile