RNA id: TU63657


Basic Information

Item Value
RNA id TU63657
length 2853
RNA type TUCP
GC content 0.47
exon number 8
gene id AMCG00008696
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9116675 ~ 9122812 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGGCAATAACAGGGAGGCTGCTGCCAAAAACTGCTCCGGCGAAACACAGTCAACTGCATTGTCGCCAATCACTGAATACCCGGTGGGAGGCTTGGCTACCGGAAGACGATTATTTTGTAGTGTCGGCTGAAACTCCCAACAAGTTGTGATCTAACGTCCGACGTCTTACTTCAGGCGACGATACTCAGGGGAAAAAAGCGCCCGACTTATGCAAATATGCATTGAATATTAAGGCAGCATAGAAACATAACTCGCCCGGAACAGAATCAAACCGACACAGAATTCCACTAACAGGGTAGCTGGTGGAGGCTGGAGGGGTGGGAGCGGGAGGGGGTTGCTGGGTAAGGTCGGGACTGAAAGATGACGACGGAAACGCACGTGAAGGACATCAAGCCTGGCCTCAAGAACCTGAACGTCATCTTCATCGTTCTGGAGACAGGTGGAGATGGGTCAGGTTAAGGAGGTGACAACAGCTGGGGCTGGAATGACCAACCATCCAGCAGACACCACGAGGCCTCCCGGACCCAGGCCAGGGAACCGCTCTCCGACTGATTGTAAGGcgtcgggggggggggtgaagagTAAATGGTGTCGtctgtctttgtgaaggacgagTGACGAAGACCAAGGACGGGCATGAGGTGCGGACCTGCAAGGTGGCCGACAAGACAGGCAGCATCAGCATCTCGGTGTGGGACGAAGTGGGGGGGCTGATCCAAACAGGAGACATCATCCGACTCACCAAGGGgtaTGCTTCAGTTTTTAAAGGCTGTCTCACTCTGTacacagggagagggggagagctgCAGAAGATTGGAGAGTTCTGTATGGTCTATTCGGAGGTGCCCAACTTCAGCGAACCCAACCCCGAGTACTTGACGCAGGTCAATAAAACATCTCTGAATGACCAGGGAAGCTCCTCTCACAGCAACAGCACTCCTGCCGTCACAACTGGAAATGAGACCACCAATGGGAACGGAGTAAGCGCCCCTGCTGCCACCACCTCCACCAATCCCCAGCAAGCAGTGCGGAGCAGCACCCGTGGGGCGGCCAATCAGGGGGCGGCTGTGGCGGTCAGCAACGGCAAGGAGACGCGCCGCTCAGCCAAGAGATGATTGGACCAGGGGGCAGGCCCCTCCCACACCAGCACCCAGGAAATAAATAGGCTAGGATTTTATAACCTGCATTGGGTCTCCACTGAAGCCTTTTATCCCAGTCCTTCACATCCAAAAAAACTCACCTGtagctctggtcctggagatccACTCTGAAAGACTTCAATAGAgcaattatttttgcatttattagaATTTAATGCATTTCCCAGATCACTATATAATTACCACATAAAAGCTAAAGGCTCTAGGACAGAGGCTCTCTAGGACCAGGGCAGGAGGACCCCACCCCTTGAACATACAAGGTTCTTGACTCCTGATATACCAGATACTCTTTATGGTGCTGTTTCTAAATCATCACTGTTATTACACAAATTACACACGCCTTGATAAACTTTCTATTCCTAAAATGCAGATATGTATACACAGAACCCTGCCATGTTAAAATCATCGCATAGTTGACAAAGATCAGATTAATGTGGCACAACACTCAGCACTAAAGGGAGcagccacaaacacacaggtagCTGTTAGCTGGCTCCTTGTGCATCCTGCAGGGGCAAGGCAGATATTTATGCCACTGGGGGCTGAAGTGCTGTGGTGGGAAACTGCAGCTCCACTACTTTTGGGGTGGGTGGGAGGGCAGATTAATTTTATTACAGCAGGGCTCCTATGCTTTGCCCACTTTATATTTGGTAGCATTTTTAAAGgagcattaaaaacaatcccCTCGCAAGTGGCTAGGTCAGTTGTCTGATCTCCAAAATGGCGGCGAGTGACAGACAAAATATCCACATTTTATCAGTCTCATGTGTTTCCATCACTTTAAGGAAACGGCAGCGGGTTTgtcagtaaaaaaaatgttttaaatctagAAGATTTTGTAGCTCAGCCTGTGCCTCAGGATTGGTTACATCACCATTTTCAAACTGACTGAAACCACAGTGAGCCATCCGCGTCTTTTCCCAACATTTGCATGCATTCCCCGAGGCAGCACTGTGCTCAGATGACAGCAGGCCGAGACACTTCCAGAAAACTCTCAAACAGACTAGGAAATGGAGGAAGTTTCAAAACATTGGACTTTTGCCCCCACCAGCAAACAGATTCCGAACTTCACTCAAAAAAAGATGCGTGTCTTCGAGCTGTGAGACCTTCTCACTGCAAAGTTGTTAAGCGGAACCACCGTGAATTAAGATggaatattttgtttccatcaGCCTTGGGGAGAAAAGATACTAAGTGAACCAAATTAATTGTTATTAGATCTGTGTGAAAGACTCTCAAACTCAACTCCTGGGGGGCTACACTGATTCTGCATACaccacttttatatatatatatatatatatatatgtcttaaagagattaaaaagtaTGGTGAAATGCTTTCTGACTTTTCAGGACTAAACATCTGTGCTGTTAGAAATATGACGCGTAGTAATGCTTCTTTATGACTGCCGATTTTCCATCCTTTGTGTTCAGCCCTCATGATACCAGTGTAAAATGTCACTGTCACATGCCATTCTTTTGAAATACAGCGGCTGGATTTGTTGAAAACCTGTGTGGGATTTCTGTGTGTCacgtgtgtgttttaaaagtgagagggggaaaaaaatgtggctaggatttattatttatttattagcagacataGGTCTCATACTATCTTTCAGCACAGAAACCATACTTACACCAAACAATGCAATTTCAAGTGAGGTGTCAAAAGCTGAATTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63641 lncRNA upstream 121834 8994536 ~ 8994903 (+) True G50878
TU63573 lncRNA upstream 307346 8803206 ~ 8809391 (+) True G50823
TU63486 lncRNA upstream 527609 8572729 ~ 8589128 (+) True G50757
TU63420 lncRNA upstream 791959 8278853 ~ 8324778 (+) False AMCG00008664
TU63703 lncRNA downstream 68965 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 69718 9192530 ~ 9192919 (+) True G50930
TU63705 lncRNA downstream 70203 9193015 ~ 9193685 (+) True G50931
TU63706 lncRNA downstream 71592 9194404 ~ 9194638 (+) True G50932
TU63764 lncRNA downstream 230166 9352978 ~ 9354405 (+) True G50983
AMCG00008688 mRNA upstream 203395 8903214 ~ 8913342 (+) True AMCG00008688
AMCG00008685 mRNA upstream 235569 8866279 ~ 8881168 (+) True AMCG00008685
AMCG00008683 mRNA upstream 276220 8826047 ~ 8840517 (+) True AMCG00008683
AMCG00008684 mRNA upstream 331858 8780753 ~ 8784879 (+) True AMCG00008684
AMCG00008679 mRNA upstream 344889 8764331 ~ 8771848 (+) True AMCG00008679
AMCG00008695 mRNA downstream 429 9123241 ~ 9132238 (+) True AMCG00008695
AMCG00008701 mRNA downstream 52808 9175620 ~ 9184530 (+) True AMCG00008701
AMCG00008700 mRNA downstream 147550 9270362 ~ 9282607 (+) True AMCG00008700
AMCG00008706 mRNA downstream 167876 9290688 ~ 9309599 (+) True AMCG00008706
AMCG00008710 mRNA downstream 190415 9313227 ~ 9315306 (+) False AMCG00008710
TU63666 other upstream 28770 9081827 ~ 9087967 (+) True G50900
TU63473 other upstream 450189 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 799135 8313425 ~ 8317602 (+) True AMCG00008664
TU63267 other upstream 1176966 7933829 ~ 7939771 (+) True G50583
TU63268 other upstream 1176966 7933829 ~ 7939771 (+) False G50583
TU63743 other downstream 187274 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 187274 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 187274 9310086 ~ 9316151 (+) True AMCG00008710
TU63913 other downstream 806666 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 806666 9929478 ~ 9931081 (+) False AMCG00008727

Expression Profile