RNA id: AMCG00008700


Basic Information

Item Value
RNA id AMCG00008700
length 3986
RNA type mRNA
GC content 0.48
exon number 17
gene id AMCG00008700
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9270362 ~ 9282607 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATTTGAATTGTAACGAAAGCAGCTTGGGACGATTTAGCAAGGTGTGGAGGGGATACTCTTACGAAATTACGGGTGAATTGATATAGATATATCATTTTACATAGAGGAAGCCGCGAAAGCAGAGATGGATTCGGCCATGGTCAGTCTGCACAGCCTCTTTGAGCAGCTGCAGGAGCATGTGGAAGTCTTGAGTGAAGGCATCGAGCCACAGTTCATCCAGCTGGCAGTGAATTTCGAGAACTGCCGCCGGCGGTGGCAGCGCTGTGAGCAGGAGCTTGGCAGCTCTAAGGAGGTGCTAGCCAAGGCGGAGACAGAGCGCAGTGCCCTGGAAGTCAAACTCAAACACGCCCGCAACCAGGTGGACGTGGAGATCCGCCGGCGCCAGAAAGCAGAGGCTGACTGCGAGAAACTGGACCGTCAGATCCAGCTGATCAGAGAGCTGCTGATCACAGAGGGGTCCACCAGCATCCAGCTCAACGATGAGCAGAGGTCTGCCCTGGCCTTCCTGAACGCCCGCACCCAGCCCACGCAGCAAAACACCAGTCGCCGACTATCCACAATTGATGAGACTGGGTCCCTCCTGTCTGACATCAGCTACGACAAGACTGATGACTCCTTGGACTGGGATTCCTCTATAGTGAGAACAGTCCGtctgaagaagagagagaagcgaCGCTCCTCCAGACACCATGTTGACGGTCCCCCGGCTGCTGCCAAGAGATCACGTTCCTCTGGCAAGGCAGAAAAGGGCAATGAGTCCATCATCACGAAGACCAAAGTTACAGTCCCTAGCGATGGGGGTCCGATTGAGGCTGTTTCCACCATTGAGACCGTACCCTACTGGACTCGCAGCAGGAGGAAGACTGCTACCCTGCAGGGCTGGGACTCTGAGTCGGGCCTGTCTGAGCACGCGGGAGAAAAGCAGAATCATCCGGAGCTGATACACCACGCCGAGCCTAGCACCCCTCAGGGCAACGGAGGCATTAGGCTGCATGAGTTCGTCTCCAAAACGGTGATCAAGCCCGAGTCCTGTGTACCCTGTGGGAAGAGGATCAAGTTTGGCAAAATCTCTCTCAAATGCCGCGACTGCCGGGTGGTGGCTCACCCTGAGTGCCGTGAGCGCTGCCCCCTGCCCTGCATCCCCAACATGGGCAGCACCCCTGTCAGGATCGGAGAGGGCACCTTGGCTGACTACGTGTCCTCCAGCTCTCCCATGATCCCCTCACTGGTGGTCCACTGTGTCAACGAGATTGAGCAGAGGGGCCTGCATGAGACGGGGCTGTACCGGCTGTCTGGGGCGGAGCGCACCGTGAAGGAGCTGAAGGAGAAGTTCCTGCGGGGGAAGACCATCCCTCTGCTCAGCAAGGTGGATGACATCCACGCCGTGACCGGCCTGCTCAAGGACTTCCTGAGGAACCTCAAGGAGCCGCTGCTGACCTTCCGGCTCAACAGGCCGTTCATGGAGGCTGCAGAAATCTCAGACGACGACAACAGCATCGCCTCCATGTACCAGACCATCAGTGAGCTGCCTCAGCCCAACAGGGACACGCTGGCCTTCCTGGCCATCCACCTGCAGAGggtCGCCCAGAGCCGGGATACCAAAATGGACATCTCCAATCTGGCCCGGGTCTTTGGCCCCACGATAGTTGGCCACGCGGTGCCCGATCCAGACCCCATGACCATCCTACAGGACACTAAACGCCAGCCCAAGGTCATGGAGAGGCTGCTGAACCTGCCCGTGGAGTACTGGAGCCAGTTCGTCATGGTGGAGCAGGAGAACATGAACCCAGACCACATGGTCTTTGAGAACGGCAACACCTACGCCACCCCTGATGGCAAAGTGAGCATGCTGGGGCCCCTGACCACTCCAGAGCACCAGATGAGCAAGACGCCCTCCTCCAGCTCTCTGTCTCAGCGCATGAAGACCACACTCAGCAGAACCACTCCCAAGTTTGGCAGCAAGAGTAAATCTGCAAGCCAGTTCAGTCGACAGGGCAACTTCTTCGCCTCACCACTCCTGAAGTGAAGTGACTCCAGAGTGACATCGGATTGGTAAAACTCACACAGATTCTGATGCGGTCCATGTAACGCCCTGTATTTGTATCATGCTTCCAAATATCTGTAACTAGTGTGAGTTGTTATAAACagttttatgattatttaatcTCTATTTTAAGCTGactcatattttttaatgttcctttgCATATGTGCAGTAATCATGACCAAAGGAGGTGCACAATggaaaagtgatttattttttgtgacaaTTGAAATCCACTGTTCTTGGTGGATTCCTTATAACCATGATTTTGTTATCAGTATTGTAAACCTGTTTAGTCTGCCAGTAACCTGTAACAGCTCAAATTGATGTGCTGAAGTGTATCCACTACATGTTGTCTATGGTACTAAAatatgtggtgtgtgtgtaagtgcGGTTTTGGTACCTTATCAGAATTTGGTACACGTGATTTGCAATGTAAGGAGCATTCATTGAATTGGCCGTTTCAATGAATCCTAGTTCATATTTATACTAAAAGACTTTAAATCTGATCGAATAGACCAACATTTAGGCATTTTCCTCATATGTGACTGTTAGCACTAATGggtattatatttaaagatacatttttaaatgtttcctttcaatcCAAGGGCCTGGGAATCCATACTGGGGTTCCCCGCTGTAAGAGGCTAGAAAAAGCCATTTTGCATGTCCAGTGCTCTTAGTACCAAAATTGTGATGGGTACCAAAAAATGTGATTCCAGTACGTGTCTTTCACCTGCATTAACACACCAGAGTGGTTCACAGTACTGGAAAATCATCTCTGTccactgtaaatatttatgaatggTTGTGATGTTTTATCTGTaacatactttttaaatgagagagGGTGCATCTTTCATCAGTTCTGTTTTCTACAATGTTCATTAAGCAATTGCTCACCTAATCCAACCCAAGTTGGAAGGTTCTGCCTCTTTGTGTGTATGAAGTGATCTCTTCTGTTCCCTCCCTTCCCCACACTTGGGTAAATTATCCTGTCACACATCTTCTGTACCCTTCAGACTTGACATGACATGGCTATCTTTCTTTGGGAAATGATCATAAATCCAAAAGAGGCACAGAAAGGGGTAAAGGCCCCTGTCTCTCTCTAACCGCTCCTTCAAATCTGGTGGTGAAACTGATGAGACTAGTGTTGCACGGTAGTTTGGCCTGTTTCAGGAATTCGGGCAGCTCGAATGTAAGCTGGGACAGCTTAGTCGATGTAACAAGCTTGTTACTTATTTagaaaggggggaggggtggaaaaaaagcattttgcatttaaaatattttgtacaatCTGCACCTGCTGCTTGTAAGAATGGGACAGGATCAGATGCGTACACCCTGGGAGACTTATTGGATTCCCTGCCGTGCTCCATACTAGCTTAAATAACAAACCTTTGATTCTGTTCCTGGAAGAGCTCCTCACAAACGAGCTCAAGGAAACCAAACTACAACACtggaattttgttttaatcattcagAACAAAGAAAGGTGTCTGTCTTGTTTCTATCCAGGTAAAAATGGTGATGGAAACCAGGACCTGTTTGCAGCGAACAACTGctgtacaaaacaataataatctatatACACTTTGAAATAGCAACTGCAGCCATGCTCATTGAACCAGTGTGATATTTGCTTGAACAGTTGCAGGATTtgtattaatcaaataaatgttcTGCATTTGAAAGCCTTTGATCTGTGTTAGGGCAGCAATATTGCACTGTGTTTCGAGCTGTAATCCAATGTCTACATTCACCCGGTATCGAGTGTTGTATTTGCATGCTGTGCTATTTCTTCATAAATATTGGTAAAGAAATCTGTCTCGTTTGGTTACTTTGTACACCTTTCTACGTGACTATGCCTCTATCCTAGTGAAGAGAGACGTGGTTATAGAATGTAGCCTCTTagtgttgcatttttttaaagg

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K16733 RACGAP1, Tum; Rac GTPase-activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63706 lncRNA upstream 75724 9194404 ~ 9194638 (+) True G50932
TU63705 lncRNA upstream 76677 9193015 ~ 9193685 (+) True G50931
TU63704 lncRNA upstream 77443 9192530 ~ 9192919 (+) True G50930
TU63703 lncRNA upstream 77985 9191777 ~ 9192377 (+) True G50929
TU63641 lncRNA upstream 275459 8994536 ~ 8994903 (+) True G50878
TU63764 lncRNA downstream 70371 9352978 ~ 9354405 (+) True G50983
TU63777 lncRNA downstream 86525 9369132 ~ 9379579 (+) True AMCG00008707
TU63786 lncRNA downstream 109420 9392027 ~ 9398369 (+) True G51000
TU63867 lncRNA downstream 358149 9640756 ~ 9715167 (+) True G51065
TU63900 lncRNA downstream 509531 9792138 ~ 9794219 (+) True G51094
AMCG00008701 mRNA upstream 85832 9175620 ~ 9184530 (+) True AMCG00008701
AMCG00008695 mRNA upstream 138124 9123241 ~ 9132238 (+) True AMCG00008695
AMCG00008696 mRNA upstream 148695 9116675 ~ 9121667 (+) False AMCG00008696
AMCG00008688 mRNA upstream 357020 8903214 ~ 8913342 (+) True AMCG00008688
AMCG00008685 mRNA upstream 389194 8866279 ~ 8881168 (+) True AMCG00008685
AMCG00008706 mRNA downstream 8081 9290688 ~ 9309599 (+) True AMCG00008706
AMCG00008710 mRNA downstream 30620 9313227 ~ 9315306 (+) False AMCG00008710
AMCG00008708 mRNA downstream 56224 9338831 ~ 9350517 (+) True AMCG00008708
AMCG00008707 mRNA downstream 72485 9355092 ~ 9377055 (+) False AMCG00008707
AMCG00008712 mRNA downstream 106804 9389411 ~ 9391756 (+) True AMCG00008712
TU63657 other upstream 147550 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 182395 9081827 ~ 9087967 (+) True G50900
TU63473 other upstream 603814 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 952760 8313425 ~ 8317602 (+) True AMCG00008664
TU63268 other upstream 1330591 7933829 ~ 7939771 (+) False G50583
TU63743 other downstream 27479 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 27479 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 27479 9310086 ~ 9316151 (+) True AMCG00008710
TU63913 other downstream 646871 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 646871 9929478 ~ 9931081 (+) False AMCG00008727

Expression Profile