RNA id: AMCG00008701


Basic Information

Item Value
RNA id AMCG00008701
length 1838
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00008701
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9175620 ~ 9184530 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACGCACGTCCGGTATTTGTCACCTTTCGTGCTGACGCAAGCAGGGGGTGACGCAAGCAGGGGGTGTGGCCGGGGCGGCGTGACGTCTCCTCCAGTGACAGAGGCGAGCGGAGCAGTCCACCCGAGCCGGTATCTGGCGGAAGGTCGGAGATTTGTCTCAGTGAAAGGatatacagcaaaacaaaaacgagCCGCAGAAAGACACAAACATCTCGACAAATGACAGCACATCGGTGACAAGGGCCACGGACTGCTGGAAACCCCATGCCGGTTCCCGGGGTTTGGCGGATATATCGACTTGTTTTTAACGTTGGGCTGCCCGATACACAGCTTGCGTCGTGACATCGTATTGTTGGTCGCATCCAGCGCAACACAAACTAAACCCCCGGGGCGCTCGGCCGCACAGCACAGCACGACCGGGCTTTGGTTTCTGTTTACGACCGGTGCTCTTTCGGGGGGGGAGAAGAACCACCTACCCCCCGGCGGAGGGTGGTGTAACGCCCTCTCTTTCATAAAACACATCATAATATACGGCCATGGCGGTTTCAGCCACCGCTCGGCGGCTGCCCATGGGCGTCCGGACATACAGCGAGTTGCTGGAGATCATCACCCTGGGCACCGGCCGGTCCTGCAGCGCAGCGGGGGCCCGGGCCCGAGCACGGCAGCCAATCAGacACCTGTCTTCCTGTGGGATTCTCATGACGCGGactcccagaatgctttgctgCTTAGGGTGGGATTCACCCATTCCATTCAGTAGATCGTTCATCAACTTCACCAACCCGCTGACCAATAAGAGGAAAGAGTATTCTGAGCGCAGGATACTGGGGTACTCGATGCAGGAGATGTACGACGTGGTGTCCAATGTGGACGACTATAAACTCTTCGTGCCCTGGTGTAAAAAGTCCACAGTGATCATGAAGAGGTCAGGTCACGCCAAGGCCCAGCTAGAGGTTGGCTTCCCCCCCATCATGGAGAGATACACCTCAATGATCACCAACGTGCGCCCACACCTTGTGAAGGCCGTGTGTACCGACGGCAAGCTGTTCAACCACCTGGAGACAATATGGCGCTTCAGCCCTGGCATCCCTGGCTACCCCCGTACCTGCACTGTGGACTTCTCGATCTCCTTCGAGTTCCGCTCCCTGCTGCACTCCCAGCTGGCCACGGTGTTCTTCGACGAGGTGGTCAAGCAGATGGTGGCCGCCTTTGAGCGGCGGGCGTCCAAGCTGTACGGCCCGGAGACGCGCATCCCCAGAGAGCTCATGTTCCATGAGGTCCATCAAACGTGAAGCAGGGGAAACGGACAccactgcccccctcccccgcccGCTCTCTGTGCCACTGCAATCTCCCCAACCTCTGTCCCCCCCTGTCCCCACCTCCTGTCCCTCCACATCCTGGGGGAAGGAGCCTTGTAGCCCCCAGACAGGAGCTCAGAGCGGGTGGAGCCATTCCAGCCTTTACCACCATTCTCCTGAAGCAGTACAGTTTGCCCTCACATTGcgcgcacactcacacacacccacccactgTAAGGACCAGCAATTCCCATCGCAACATACAGGGCATCTCAAAAGCTAGCGTTCAATACAGACCTGCTTTGGTCCAGATCCCAGCAGAACAACCCCTCGTGTTTCTGTCTGAGCTGGGACTTCCCTGCAGCCGCAGTGAATTCAGAGcgatcattttagttttttcctaaCCCCCTACCCCAACCTCACACAGGGGTGATTGTTGGACTGAATCTGGGCCGCAGACCCTGTATCTGAAAGTGGAGCACACTGTAGCCACATTCCTGCTGCTCAGTCATGAGTGGAGAATTGGGGCAGGTGG

Function

GO: NA

KEGG:

id description
K18588 COQ10; coenzyme Q-binding protein COQ10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63641 lncRNA upstream 180717 8994536 ~ 8994903 (+) True G50878
TU63573 lncRNA upstream 366229 8803206 ~ 8809391 (+) True G50823
TU63486 lncRNA upstream 586492 8572729 ~ 8589128 (+) True G50757
TU63420 lncRNA upstream 850842 8278853 ~ 8324778 (+) False AMCG00008664
TU63703 lncRNA downstream 7247 9191777 ~ 9192377 (+) True G50929
TU63704 lncRNA downstream 8000 9192530 ~ 9192919 (+) True G50930
TU63705 lncRNA downstream 8485 9193015 ~ 9193685 (+) True G50931
TU63706 lncRNA downstream 9874 9194404 ~ 9194638 (+) True G50932
TU63764 lncRNA downstream 168448 9352978 ~ 9354405 (+) True G50983
AMCG00008695 mRNA upstream 43382 9123241 ~ 9132238 (+) True AMCG00008695
AMCG00008696 mRNA upstream 53953 9116675 ~ 9121667 (+) False AMCG00008696
AMCG00008688 mRNA upstream 262278 8903214 ~ 8913342 (+) True AMCG00008688
AMCG00008685 mRNA upstream 294452 8866279 ~ 8881168 (+) True AMCG00008685
AMCG00008683 mRNA upstream 335103 8826047 ~ 8840517 (+) True AMCG00008683
AMCG00008700 mRNA downstream 85832 9270362 ~ 9282607 (+) True AMCG00008700
AMCG00008706 mRNA downstream 106158 9290688 ~ 9309599 (+) True AMCG00008706
AMCG00008710 mRNA downstream 128697 9313227 ~ 9315306 (+) False AMCG00008710
AMCG00008708 mRNA downstream 154301 9338831 ~ 9350517 (+) True AMCG00008708
AMCG00008707 mRNA downstream 170562 9355092 ~ 9377055 (+) False AMCG00008707
TU63657 other upstream 52808 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 87653 9081827 ~ 9087967 (+) True G50900
TU63473 other upstream 509072 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 858018 8313425 ~ 8317602 (+) True AMCG00008664
TU63268 other upstream 1235849 7933829 ~ 7939771 (+) False G50583
TU63743 other downstream 125556 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other downstream 125556 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other downstream 125556 9310086 ~ 9316151 (+) True AMCG00008710
TU63913 other downstream 744948 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 744948 9929478 ~ 9931081 (+) False AMCG00008727

Expression Profile