RNA id: AMCG00008702


Basic Information

Item Value
RNA id AMCG00008702
length 2547
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00008702
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9223114 ~ 9229459 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATTCAAGCTGGCATTTACCCGGACAGCCCCGGCAAAGCGTCTGGTTGCCTACGTCACCGACTTGTAGTTGGCAATGGAATTGCAGCGGACCAGTGTTTCATTGTAGCGGAGGATTAAAGTCAAATTCACCAGGAGAAGTATCAGCTGGCATCCTGAGGAAGATGAAGGGTGGTGTGAGGGCActgtctgtgtgcctgtctgtctgtctgctcctAGCTCTCCCACATGTCAGTCACGGTCGTGGTAGGCATGGACAGGACATGCGCTGTGGAGGTGCCCTTTGCCCGCTCCGAGGCCAACCTCATGGAGCTGATGGAGGTGGTCTGTGAGAGGATGACCGAGTATGGGGAGAGGGTGGACCCCGTCTCCGACCGCAAGACCTACGAGCGCATCTTGTCCCGGGACGGCAAGAAGATGGACCTGTCCCAGACCAAGTTGGACACCCAGGTCACCGCCAGCCTCAAGTTTGCTaTCTGTGTGACCATGCTCTGTACATACCTCATGATGAACTCTGacctccagtccagtccagtcactGAGACTCCTCTACTGGGAGGGAAGGGGGTGTGACTTTGTGACATCCTTCCAGTGACCCCCTCCGCCCCTCCCAGCTCTCAGATCTGCCAGTCAGTGCAATCCTAGACACAGCTCAGTGTTACAGATCAGGTACCTAGAGCTCTGCTGTACCACACATGTCTACAAGTCACAGGCATCTGGTTCCctcatcaatatttttttattcccacACACCTccttacttttttttccccctgatcTGTTGTTGTTATCTGATACCTTAGACCAGGGTGACTTGTATTCAACACAGATCTATTAAAAACGATATAGTGTAAAGGCTACACATCATAAATCTGCATCACAAAAAGTGCTTTATATAAGACAGCTTAATTTTGAAACATTAtacaatgcagaaactgatttTGTAACAGTACAAGAAGCCTGCTAACCACTTACTGGCTCAGTCAATGCTAACGTGGCCTTTCGTCCCTGACTGATGATACCCAAAAATTAACCAGGGCTGGACAACGGCAAAACCAACACACTTGGGGTTCTTCTCAAAATGCCTCaaaattttctttaaatgtgaaataaaccaCATTTCAAAATCCCTGGGGAAAAAACCTGTTTAAAACAGTTCTCTGTGTATATCGATGTTTGAGGTCATTTGAGCTGGCACAAGGCTTTCGCTGTATTGACTGTTTATCTTCTGATTTACATCTAGGGCAAAATCGTGACCAATTAACTACGCAAAATCAGGTTTGATCCATTCATGATGCAAGTGAAACCAGACTGAGTACATCCAGGACTAGAGTTGCTTACCACAGGTATTAGATCTTCATATCTTCCCCCCATCTTCCTTTGTATGTACGCTTTTCCTCCCCAAATATAAAGCATCTAGGCATTTGGCTTCCCTGCTCTGGCACATCTGGACAGCTGTGGACATGGGTGGGGGTGGGAAATGTTAAGGTGTCTCAGAGAGGAAAAAATTTGTCGGGGTTTTGTGGAATGGGGAAAGGGGTTGTGGGTACATTAATGCCTTGGACTCTTAAGTGGGTCACACTCATGTTAGGGCAGGGGATTTATTTGACTTGACATCTCTGAGTACTTTAACTAAACCAACACTCCTCCAGCTGTCTCTGTGTAGAAACCATTACaaatggcatttttattttttattttttttgttttttttaaattttgttttgaaCTTTGAGTGAAGTTGAAATTTAAATCCTTCCACATCCTTCAGTCTGCTCCTCCAAACAGACATGTCTCCTTTCTGTATGACTTTCAGGAAAGGCAAAATAATGTCCCCATTAGGATTTTCATCCAGATAATCCGCATTGATCTGGTTACAGCTCTACAGAGCTGTAAATATCATTCACATACTAGCTATCGAAACATGTACAAAACTACCCTGTATTTAACTTGAATTTATGTTTGCCTGTGAATCTCCAGTCTTTTGACATTGACAATGTACATAGTAACAGGATTCTGTCTCTGGTGGTTCTACATTCCAGCTGAAATCTTTCTGCTCTTGTTTTGTATAAGAggggattttcttttattaaacagtttcttttttgagaaaaatatttCTACATCAATGACTAAAAtgccttttctctcttttgttaaaattaagtaTGTGGGATGTGACAGGTATTTTGCCTTGATATATAGccaaattatttgtttacagGACCTACATCATTCATATAGAATTTTAGAAACACTGAAAGAGACTAATATAAAAGCATGTTCACTGTCGCATTGTCTATACCACATTTACGAGTTggacattaaacaaatacactgcATTCTATAGGTATCCTGTGAAACACGTcacaattaaacacataatGTAGATGTTGATAAAATTCCTGAGATCTGCAGTGCCTTCAAAAATTATTTGGCCACCAGCACTTCTCCTCAGTGGGATTTTGATGCATTAGATagggattttttatttgtgagtCACACACTtcaccccccccgcccccaaccaataagaaaaaaaatggt

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63686 lncRNA downstream 73176 9144344 ~ 9149938 (-) True G50915
TU63589 lncRNA downstream 382459 8837359 ~ 8840655 (-) True G50836
TU63521 lncRNA downstream 648776 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 839107 8372506 ~ 8384007 (-) False G50740
TU63785 lncRNA upstream 147113 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 151292 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 158799 9388258 ~ 9388608 (-) True G51004
TU63791 lncRNA upstream 159365 9388824 ~ 9389048 (-) True G51005
TU63792 lncRNA upstream 159752 9389211 ~ 9389570 (-) True G51006
AMCG00008705 mRNA downstream 17722 9197433 ~ 9205392 (-) True AMCG00008705
AMCG00008698 mRNA downstream 52832 9150060 ~ 9170282 (-) True AMCG00008698
AMCG00008697 mRNA downstream 120234 9081827 ~ 9102880 (-) True AMCG00008697
AMCG00008699 mRNA downstream 155684 9036933 ~ 9067430 (-) True AMCG00008699
AMCG00008694 mRNA downstream 187171 9019960 ~ 9035943 (-) True AMCG00008694
AMCG00008704 mRNA upstream 2667 9232126 ~ 9255654 (-) True AMCG00008704
AMCG00008703 mRNA upstream 54091 9283550 ~ 9287687 (-) True AMCG00008703
AMCG00008709 mRNA upstream 92118 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008713 mRNA upstream 184239 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008717 mRNA upstream 302374 9531833 ~ 9554934 (-) True AMCG00008717
TU63526 other downstream 563097 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 851784 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 928760 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 928760 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 948599 8270324 ~ 8274515 (-) True G50712
TU63794 other upstream 161384 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1344024 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1447804 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1447804 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1450819 10680278 ~ 10712485 (-) False G51241

Expression Profile