RNA id: AMCG00008703


Basic Information

Item Value
RNA id AMCG00008703
length 1969
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00008703
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9283550 ~ 9287687 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAGTGCGTTGGCGAAGTGTGCCCTCGCCGACCTGGCAATTCAATGGCTCGGGTGGGCTGTGGCTTCCGCATTGAAAACGGAGAAGTTCTACGATTTGGCGGGTGAGTCCCGGCTGTGCTCCACAGGGCGCCTGCACGGTTCGGGAACCTTCGTCCTGCTCGCTCACCTCAGCCGGCGGTGGGGAGGGTCCGGCTACCGGCGGCAGAGCATTCAGACCGGCCTGGTGACAGTGTGGGGGCTGCGGTTGGGCTTGTTCCTGTTTCTGCGGATACTGCGTGAGGGGAAGGACCGGCGCTTCAACAATGTCAGGGACGATCCGGGCACTTTCTTCACCTACTGGACCGTGCAAGCTGTGTGGGTGTTCGTGACGCTGCTCCCCACCCTGATTCTCAACACGGAGCGCCGAGACCTGCCGCTGGGGGGCCGGGACTACCTGGGCTGGGCCATGTGGGGGCTGGGCTTCGCCACGGAGGCCATCGCAGACCAGCAGAAGTGGGACTTCAAACGGGACCCTGATAACAATGGGAAGTTCATCCAGAGTGGACTGTGGGCCTACAGCCGCCACCCCAACTACCTGGGGGAGATCCTGCAGTGGGGCGGCCTCTTCCTCTCGGCCTCCTCGGTGATGCGGGGCGCCCAGCAGCACCTCAGCGTGGTGTCGCCGCTCTTCGTCTGGTTCCTACTGCGCTACGTCAGTGGCATCCCCATCCTGGAGAAGCAGGCGCTGAAGAAATGGGGCTCGGACCCGGCCTTCCAGCAGTACATCCAGAACACCCCCCTGCTCTGGCCCTTCCTCGGATGACCGCCCCCCCAACAATCCTACCCAGCTACACATACAGAGCACAGCAAGGGCTAAAcctgacagagaaagagagtaCAGTACAGGAAGGTTATTTTCAAACTTGAGTAATGATGTGGCTTTCCCTTAACTTACAAAACAAAGGTTGTGTGctttaatacttttaaagtgCTGCAGTAGAACAAAAACTCTCCCGTCCTAAATAACCTCATGTAGCACTtgagacaggaaaacaaaatactgaaggGATGTCCTTGAGGGCCAGATATCACAGGTCTTATAGGTCTCGCTGGGCCTCCATCTTGTAAAGACCTGGGAAGAAATGTAATCATAACCAATAAAGTGAACACCATTCGTTATTGACCACTGGATTAGGAGAAAGACCCCTCATTGATTCAGAGCTTGGGGGTTTAGGGGGGGGACGACACATTCTACACTACATTCAGATCTGCAATGCTCAATACAAATTCCATACAGGAAATCAATGCTCCCAGTACAGCGTGTGCCCAGTTCCTCATTTAGACAACTCTCAGTTCACTGTGGTCATCTATTATAAACCAAATTATCTCAGATCAACTGTAACAGTGGAGTTCCTCTTGGCAGCTTCATTGAACATTTGAAAGTCCACCAGTTCTAAATACATACAGGAGacaaaaagtgtgttttaaaatacattactgtacttttttgtttcttgaaccatctttattttttattttttaattcccccCCTCGGGAGGAcaactttattgtttatttaatcactttcagttagtttaaaaaaaaaatacaaaaaaatggaaTAACAGTTTCTTTACACTTCCCTACCCCCAATAACCCCTCTAACCCCACCCAACCCTCTTCCACCCACGCTCCCCTACTACCCTTCCCTACCCATCCAAGACTATCTGTGGccaagagacagacagacagacaaacaatcAGCAGagtaaacaattaaatcaacagGTGGACAATTAGACAGACGGACTGATGACACGTCAGCAAACTAAGATATAAACGTACAATTGTGCGCATATATAGGATACCAGTTGGGATGTATCACTCACGTCCAAgcataataaagaaaagagggggggggaagGAGGGGACACAAAcccacataaataaattaatacattattaacagactgtttgggtgtgt

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63686 lncRNA downstream 133612 9144344 ~ 9149938 (-) True G50915
TU63589 lncRNA downstream 442895 8837359 ~ 8840655 (-) True G50836
TU63521 lncRNA downstream 709212 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 899543 8372506 ~ 8384007 (-) False G50740
TU63785 lncRNA upstream 88885 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 93064 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 100571 9388258 ~ 9388608 (-) True G51004
TU63791 lncRNA upstream 101137 9388824 ~ 9389048 (-) True G51005
TU63792 lncRNA upstream 101524 9389211 ~ 9389570 (-) True G51006
AMCG00008704 mRNA downstream 27896 9232126 ~ 9255654 (-) True AMCG00008704
AMCG00008702 mRNA downstream 54091 9223114 ~ 9229459 (-) True AMCG00008702
AMCG00008705 mRNA downstream 78158 9197433 ~ 9205392 (-) True AMCG00008705
AMCG00008698 mRNA downstream 113268 9150060 ~ 9170282 (-) True AMCG00008698
AMCG00008697 mRNA downstream 180670 9081827 ~ 9102880 (-) True AMCG00008697
AMCG00008709 mRNA upstream 33890 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008713 mRNA upstream 126011 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008717 mRNA upstream 244146 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008719 mRNA upstream 275213 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008718 mRNA upstream 291702 9579389 ~ 9587169 (-) True AMCG00008718
TU63526 other downstream 623533 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 912220 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 989196 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 989196 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 1009035 8270324 ~ 8274515 (-) True G50712
TU63794 other upstream 103156 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1285796 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1389576 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1389576 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1392591 10680278 ~ 10712485 (-) False G51241

Expression Profile