RNA id: AMCG00008704


Basic Information

Item Value
RNA id AMCG00008704
length 3701
RNA type mRNA
GC content 0.53
exon number 25
gene id AMCG00008704
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9232126 ~ 9255654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGCTTGACTCGGGCCAATCTGGCACAGACCGCTTTCTCAGGGTTCTCGTTCTGGCACATTTGAGCCGATCTCACAGCTCTGCGGACCTTGGGGGTTCAGGTGGCCCCCCTAGAAACTGGAAGGGGATCGGCATCGCAATGGCGGTGATTGTGGTGGTCCTGTCCCTGGTCATCATGTCCATCATCCTGCTCACCCCAGATGAGTCTCGCCTCCTGCAGCAATCCAGGCTCACCTTGGAAGACCTGGAGAGCGAGGAGTTCAAAGTTCATGACCCCGTGTACGAGCTTGCGCTGCGCACCAGGCAGGGTCATGTCATCAAACACGACGTCGGCAGCAACTACAGCACCACCCTGGTGGAGAACAGCACCTTTTTGACTCTAAAAGCGACGAAGTTCCAGGTGTCTCCAGACCAGAGGTTTGTGTTGTTGGCGTACAACGTGCAGCCGGTATACACACAGTCCTTCACAGCCTCCTATGCCATCTACAATGTGGGCACCGGgGAGATCTTGGAGCTCAACCCCCCCGAGGTGAAGCCCTCCGTTCTACAGTTTGCCGCCTGGGGGCCCCAGGGGAATCAACTGGTTTACATCTTTGAAAACAATATCTACTACCAGCTAGATGTGTCCAGTAGTGCACTAAGACTGACCTCCACTGGTAGAGAGGGGCTGGTCCTCAATGGCATCTCTGATTGGCTCTACGAGGAGGAAGTGCTTCTCACATACCCCGCCCACTGGTGGTCAGGTGACGGGGCACGCCTGGCCTACCTGGCCATCAACAACTCTGCCACGCCCATTATGGAGATCCCCTACTTCCTGGGTGGAGTCTACCCTGCCAATGTCTACTATGCTTACCCCAAGTACTATATCTCGATGGTGACCTGGATTAGCAGCACCCGACTGGCTGTGCGATGGTTAAACCGGCCACAGAACCAATCGGTGCTCACCGTGTGTGAGGCCACGACTGGGGCGTGCTCAGAGaaacacaaaatggCCGTGGATGTGTGGCAGAGTCAGCGACAGCAGGAGGCACCGCTGTTCTCTCCAGACGGCTCCTTCTTCTACCTCACCCTGCCGGCCAAACAGGGGGCACGGGGAGAGTTCCACCACATCGCCACGCTGAGCGACCAGccTGCCGTTCCCTCTACTCCATCCCGTTTCCTGACCTCTGGGAACTGGGATGTGATGTCACTGTGCGCCCTGGACGAGCAGCGGGGCAAAATATACTTCCTGAGCACCGAGGAGTCGATGCACAGCAGACACTTATACAGTGCCGACATCACCGGCGTGTTCCAGCGCCACTGTATGACCTGTGACCTCCTGCACAATTGCAGCTTTTTCAGCGCAAAATTCAGCCCGAACCGGACCAGCTTTACCCTGCACTGCCACGGGCCAGGAATCCCCCAAGTCACCGTTCACAGCACCGCCGACCCCCACAGTTACTTTGTCCTGGAGGATAACGAGGCCTTGGCTGCGGTTTTGAGTCGGAAGCGACTGCCGGTCACCGAATTCAAGACAGTCCCAGCTGAGGGCTATGATCTGCCTCTGAAGTTGGCTCTGCCCCCCGGGTACAAGGGGAACCTGCACCCCCTCCTCATCCTGCTagATGGGGTtccaggcagtcagtcagtgacgGAGAAGTTTTCCCTGGACTGGACAGTGTCTCTGTCCAGCTCCCTGGGGCTGGCTCTGGCTTGGGTGGACGTCAAGAGAGGCAGCTCTCGGGGTCAAAGGTCGCTTGGGCCGGACTCGCGCAGCTTAAGCTCGGCACAAGTCAAGGACCACCTAAGCGCAGTGCAGTGGTTGACGCAGCTGCCATACATTGACCAGAGGAGGGTTGCTCTGTATGGGAAGGCCTTTGGAGGGTATTTGACCCTGAAGATGCTGGCAGCCTCGGAGCACAGATTTAAGTGTGCTGCAGCTGCCGCCCCCATCACGGACTTCCGCCTCTACAGTGCAGCGTTTTCAGAGCGGTACTTGGGATTGCCAGCCAAAGAGGAGACCTCGTACACTaCGGCCTCTCTGCTGGGGGAGGTTCACAAGCTGAAGGACGAGGATTTCCTTCTGCTCCACGGCACGGCTGACGCCCGGGTCCATTTCCAGCACACCGCCGAGCTCCTGAGCGGCCTGGTCCTGGTGGAGGCCAACTATACCCTGCAGATCTACCCAGACGAGGGCCATACCCTGAGGGGGAAGCGCAGCATGCGCCACTGCAGCCAGACACTGAGCCGCTACTTCAGCAGCTGCCTGCAGAACCCCCGCTGGAGGTCCACCGAGGGGCAGGAGGATGAGAACTGACCCCCGCCCACCAGCCTCCcagccctctccctctcccccacccccccaggaCCGAAGCCAGCTCAGATAGTGGCAGCCCCTGTCTTCTCAATCCACACAACCTTCCACAATTCTCCTCAGGACTCTGTAAAACCGTGTACTgtctttgtttccattttttacCAATCCTGACGGGATCACAGCAGAGGTAGGGAGCGCCATCGTATCACAAACCTCCAGGCCCTGCCATTTCAGCTAAAGGTCTCTACACTTCAGGACTGTGAGGGGGACACTTAGGAGGTGCAGCGAGAAAGCCAGGCCCAGGATAATGGTCCTCTGACAGACACTTCCGGATTTGGCAGTACTCTTCCAGTTTCCGGGGgaagaataaagaaaagagGTTCCCTTTGTGAAAATGGTAGAGACAATTAAAGGGGAGACTGGTGGACAACCCTAATGCACTGGACAGCTCTGGGGAACTGAGGATTTTGAGAGTGTATTATGGTGACTCCTGTTTTTGTGTGACATCACTTCACTGCTTTGctttaagaacaacaaaaaaagtatcAGCAGCattttttgattgttgttttatctTGCTTGACGGActgactgcattttaaaactgagGTCTGACAGATGTCTCTCGTTAAAGCCTGACTCTTGAATTATACCCAAACCTAATTCCTTGTGTGTCACTTACCCTGTTTTGCGTTTTCCACCTACGTACTGAGAACTGCTTCTGCCGAGGTTGCTGTTTATGGGCTTCCCACCCTCCCGATGTGTGCTTATTTTGCAGTTTGGCAGCAGTTAGAATTATGTTTATGAATTGCCCAACACCCCTTGGAAATGTCTTGCCCAGTTGAAAGTATCGGCAGTATTGAGTGCTGCTGTCATGACCCCAGATCTCTCTACCTCGGGAAAGGCATGCGCTAGGTTTGTTCTCAAGGCCTCCAAAACTGTGCTTCCCAAAGAGCAAAATGGGATACATAGAGAAACTACCAAACCAACACCGAAAGGTAGATTTATTATGACTACCTTTTATTCATAAGACCTAACAGGTTCACTTACTATTGCTAGTAAGTAGCCAGGTTTCATACAATGttaattttatgttaataatgttCTGGTGGCTACCCTGGGGGGGAAATGAGAGAACATTTCTGAAATCTCAATTTTCAGAGTCTTTTTGAATACCTGTGTGGCTCTAAAATGGTGCTAAAGCAATTAACCGACTGATCTCAGCAGCTTAGGTGTAGCTCTACAGTGGGATGCGGTTGCATAATGATGATTTGTTCGAAACTCCACTACTCCATGCGTTACTTCTTGGTAGCATTGTCAAGACATTGCCATAATTCTAATGTTTTTACGTAATAAGTGGATGTCTATATACATATTGGATGGGATTGATTCCTGTAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63686 lncRNA downstream 82188 9144344 ~ 9149938 (-) True G50915
TU63589 lncRNA downstream 391471 8837359 ~ 8840655 (-) True G50836
TU63521 lncRNA downstream 657788 8574014 ~ 8574338 (-) True G50784
TU63465 lncRNA downstream 848119 8372506 ~ 8384007 (-) False G50740
TU63785 lncRNA upstream 120918 9376572 ~ 9379452 (-) True G50999
TU63788 lncRNA upstream 125097 9380751 ~ 9381754 (-) True G51002
TU63790 lncRNA upstream 132604 9388258 ~ 9388608 (-) True G51004
TU63791 lncRNA upstream 133170 9388824 ~ 9389048 (-) True G51005
TU63792 lncRNA upstream 133557 9389211 ~ 9389570 (-) True G51006
AMCG00008702 mRNA downstream 2667 9223114 ~ 9229459 (-) True AMCG00008702
AMCG00008705 mRNA downstream 26734 9197433 ~ 9205392 (-) True AMCG00008705
AMCG00008698 mRNA downstream 61844 9150060 ~ 9170282 (-) True AMCG00008698
AMCG00008697 mRNA downstream 129246 9081827 ~ 9102880 (-) True AMCG00008697
AMCG00008699 mRNA downstream 164696 9036933 ~ 9067430 (-) True AMCG00008699
AMCG00008703 mRNA upstream 27896 9283550 ~ 9287687 (-) True AMCG00008703
AMCG00008709 mRNA upstream 65923 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008713 mRNA upstream 158044 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008717 mRNA upstream 276179 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008719 mRNA upstream 307246 9562900 ~ 9565171 (-) True AMCG00008719
TU63526 other downstream 572109 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 860796 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 937772 8270324 ~ 8294354 (-) False G50712
TU63430 other downstream 937772 8291799 ~ 8294354 (-) False G50712
TU63428 other downstream 957611 8270324 ~ 8274515 (-) True G50712
TU63794 other upstream 135189 9390843 ~ 9393227 (-) True G51008
TU64089 other upstream 1317829 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1421609 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1421609 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1424624 10680278 ~ 10712485 (-) False G51241

Expression Profile