RNA id: TU63777


Basic Information

Item Value
RNA id TU63777
length 3767
lncRNA type sense_over
GC content 0.45
exon number 8
gene id AMCG00008707
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9355092 ~ 9379579 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATccttagtttaaaaaaaacagattatttgttaaaaacaatctgatgtaCTTGGATATATTCAGAACTCATGGTATCCCAATTTGCCTTTGTCTCTGATTTGTACTTGGCTGGATTGCTTTTGATTTAGTGGTGTTTTTCAGCGggtttctgtttccctgttttccAGTAACGGTTCCCCCAATCACCAGCCAGAGCCAGTGGTCCAGGTGGCCGATTTATCCTGCCATCTTCTTAGGAGAGACCTTGAAACCTCCCAGAATCTGTTGCCCACGGCGACGCCGCAGGAGGCCCAGCAGTGGCTGCACAGGAATCGCTTCTCCCCGTTCTGTCGCCTCTTTACCAACTTCTCGGgtGCCGACCTGCTGAAGCTGACCAGAGACGACGTCATTCAGATCTGCGGCCCAGCGGACGGCATCAGACTCTTCAATGCACTGAAAGGCCGGGTGGTGCGGCCGAGGCTGACGGTGTACGTGTGCCAGGAGTCCCAGCAGGGCCGAGACCAGCAGCTGCAGAAGCAGGAGAATGGAGACGCAGCCAACAGCACTTTCTTCGTGTATCACGCCATCTACCTGGAAGACCTGACGGCCACAGAGCTGACGGAGAAGATCGCCCAGCTCTTCAGCATCTCCCCCCGGCAGATCAGCCAGATCTACAAACAGGGGCCCACGGGCATCCATGTGCTGGTCAGCGACGAGATGATCCAGAACTTCCAGGATGAGTCTTGCTTTGTTCTGGACACGATGAAAGCGGAATCGAATGATGGCTACCACATCATCTTGAAATGAAGACATTTGAGGGGGTTGTGCTGGATCTGGTCAACTCTTCTGGCCCATAACCAATTCATGGAGGTCACGTTTTTGTACAGAAGACCATCCAACTGCCTTGCGGAGCTTGGCTTTGAACTGCTGAAAGGATGGCACAGGGGCTTTGAGAGTGAAGAGGCctcacttcattttattttatatatatgtatatatatatctgtgtgtgtgtatatatacatattcattttaCCTTCTCACCTTCTTCTCCTTGGATTCAAAGGGATTGCCCTTCACTGTCCCTGTCCCAGATGTTTTGCAAGCAGGATCCTTAGCTTCACCTTCCATCGCCTAGTCCTGCTGTAGTTCGATGTGCCAACGCCAGCACTGGCATTAATTGcccatcttgtttttttttttttttttttttttaatgtcctgTCCCCACCCCTGTGGACAGTGCTGTCAGTGCTACCGAACTCCATCCAGATATTTCACAAGCCAATGGATGAAAATCTGTGTGGGACAATGCCATTGGTTTAGTGGAGCCCGTTTTGAAATGGATGGAGGTTAAGCCATGAAGTGTGGCCGTCACTGACCGCTGCTCTCCTCAGCCAAGCCACCGGAGATGGCCTCTGCAAACCCTCGAAGGAACTGCGCCTCGTGGTCATtttcttgtacattttgtaagCGTCGGTGCCGTGTAGCATAGCAACAGTCTGCATGTTTAGACACGTTAGCGCTGTCGTGATTGGGAAGAAGGGAAAGAGCCTTCATCTGTAAGCGACGTGCTCATCAAAAGCCCTTAATTAcagcttgctttttgttttccgtGTCGACACAGCTGTCTGCACGGGAGATGGATTTATGTGCGAGAAAACCCTGGGGCTTAAACTCCCGAACACTGGCGCTTCCGAGATAAGCTGCCGATCCTCGCGCTCATGAATCGTGAAGCACTCTGAGGATCATGGGAGTTTGTACAAGACGCCATACAGACGTCCATGCACATGCACTATTGATGTGATTGATGGTGTTCTCTACCAGGCTGATAACGGTGCTCTGTATTCCTGACACAGCTTGCATCGTAAgggtgaaggaaaaaaaaaaaaaaaaaaaaaaagacaaatatttattaatattccCCCAAACTCCCCTTACCCTCCTCCCTTCTACTTCCCCTTGTACccttgtatgtgtgtttctgaagGTTTTTTACGATTCTAGTacgttttcatttttgtgtgtgtaatgaaacCTCAACTGCTCTAACCTGGATTGGTCCAGATCTGTACTTGAGATCAGTTGAGACTGCCTAGTAAGCAGTTGTAGGTACATGTTGCAAACCTTGTACTTCACCATTTCAGCAACTGTTAATAATCGGAGCCTTTGCATCTGTTCtgaaaagttttattttttttagatcttttttaatttgtttgcacGTGCAAGTGTAAATATGTTTGCATGCTGACAAGTTGCAACCCCAGTAAAACCTGTAACGGGCACGAGATAAGCTCAGTGCGTAAGGGTTTTGCGAAGAATTATGGTTTCCTGGGGGTTCTGGCTATTCTTTTTATCAAGGTCTTTGAGAATAATCTTGTGGTCTTCAGTACAGCAGCGGTCTTTATTGCGCTGTAATGTGGCCGTTTAGGAACTCGGCACTGTAGCATTTCCATTACGATGCCATGATTGGTCTAACGTGCAATAAATCGGGGGCTTTGTAATTCACTTCCACTTAATCTTGTGTCTGGATGCACACTGAGGATACAGGACTCCGCTATCCCATGGAGAACATATCCCATGCACATGACAAATGTCGGCCATTCTTCCTCCATTTTGGAGGCCCTTCCAGCATCGCCTTAAGCAGAGGCTTATAGATCCTGAATATAAGACCTGTTAGTCGGTGAATAATGATGCAGCGAGGGCGCGGTCTGAACTAGCCCCAGTGAGGGCGTCGAAGTCGAAGGGTGGGCATGCGTGACAGAATGCTTCCCCTCCACCCCAGCCACGGAGACGCTGTGCAAATGACAGTGGGGGTCAGTCGAGTTTGGCTCCTAGTAGTGGCCCTGCAGAGCCCCACACTAGCCCACCACACCGCTTTTGGAATAGACAAAATCACCACTGTCATAATTGTACCAGTAATGACTCTTGGGGCAAGACACTACACTGCTTTACATACACTAGAGGTTAGTAGTATTCCAGTGTGGACCCAGGCAGAGACCTCTGGTGTGACTGGACTCTTTCATCCCATACCCTCATGTGTATAGTTATGGTAAATATTACCAATTAAGCAAATTAGTTGGATTAATTCATTTAGAGTACAGATGGAGCAAAAGCCTGAAAGTTATACTGTCCTTGAATATAGCTTTGGCCCTCCCCAATGCCCTAAAGCTATGTGAGGGGGCATATTAGCCAGATACTTTCACCTTGGGTTGTTCCtggtaatttaatgtaataggTAAATGAGGTACATTTTAGACCATCTTTATTCTATATATGTAGGCCTGCTACAGTATCATgagtttcaatgttttattctttctttctctctctctctctcttgctgacCTAATTTAGTAATTTCATATGGTAGAGTGAGAGAGGTACAACTGAGCATCTGTCTTCATACTGGTGACCTTCCAATAACTCAAGTTCATTGGTTTCCCGttgaattttatttctgtaaactttttttttttttttaatctagtgTGTAttcaatgtttatattttctgtcttgtgtaatgttttcatttggttCTGAAATGGAGGATGGGGGCATGTATTTGGTATAAGTATTTTTACtttgtccattttttttaatgtaatattggaAACTGTATTCACTGGGGCAGTGAAATAAATTCCGTAAGAaatctttttctcttcttttttgtgtctgaataaaatgtcaCTCGTTACAATTGAATAACATGTAATCTAACATTGACATCCCAGTGCCCTCCAGATCTCTCCTAATGGAATACTGTTCCAGCATTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63764 lncRNA upstream 14727 9352978 ~ 9354405 (+) True G50983
TU63706 lncRNA upstream 174494 9194404 ~ 9194638 (+) True G50932
TU63705 lncRNA upstream 175447 9193015 ~ 9193685 (+) True G50931
TU63704 lncRNA upstream 176213 9192530 ~ 9192919 (+) True G50930
TU63703 lncRNA upstream 176755 9191777 ~ 9192377 (+) True G50929
TU63786 lncRNA downstream 12448 9392027 ~ 9398369 (+) True G51000
TU63867 lncRNA downstream 261177 9640756 ~ 9715167 (+) True G51065
TU63900 lncRNA downstream 412559 9792138 ~ 9794219 (+) True G51094
TU63911 lncRNA downstream 535915 9915494 ~ 9937752 (+) False AMCG00008725
TU63938 lncRNA downstream 593717 9973296 ~ 9975207 (+) True G51129
AMCG00008708 mRNA upstream 18615 9338831 ~ 9350517 (+) True AMCG00008708
AMCG00008710 mRNA upstream 53826 9313227 ~ 9315306 (+) False AMCG00008710
AMCG00008706 mRNA upstream 59533 9290688 ~ 9309599 (+) True AMCG00008706
AMCG00008700 mRNA upstream 86525 9270362 ~ 9282607 (+) True AMCG00008700
AMCG00008701 mRNA upstream 184602 9175620 ~ 9184530 (+) True AMCG00008701
AMCG00008712 mRNA downstream 9832 9389411 ~ 9391756 (+) True AMCG00008712
AMCG00008711 mRNA downstream 20907 9400486 ~ 9408758 (+) True AMCG00008711
AMCG00008715 mRNA downstream 108916 9488495 ~ 9525687 (+) True AMCG00008715
AMCG00008716 mRNA downstream 148319 9527898 ~ 9529672 (+) True AMCG00008716
AMCG00008714 mRNA downstream 152212 9531791 ~ 9537457 (+) True AMCG00008714
TU63743 other upstream 52981 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other upstream 52981 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other upstream 52981 9310086 ~ 9316151 (+) True AMCG00008710
TU63657 other upstream 246320 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 281165 9081827 ~ 9087967 (+) True G50900
TU63913 other downstream 549899 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 549899 9929478 ~ 9931081 (+) False AMCG00008727
TU64057 other downstream 1325899 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 1605311 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 2080784 11460363 ~ 11465488 (+) True G51445

Expression Profile