RNA id: TU63745


Basic Information

Item Value
RNA id TU63745
length 1637
RNA type TUCP
GC content 0.51
exon number 4
gene id AMCG00008710
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9310086 ~ 9316151 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGACGGGGAGACGCAGACGCGCTCCGGGCTCCACGCTTTGGCTCGGGTGtgctttcatttccatttcGGACCCCGTTAGCTCTGGTTTTCGGGAAGTGTCAGGTCAACTTTTTCTGACGCCGCGGGGAGCTCCAGTGTTGCGCGCAGCTGCCGCTTCCTCCATCCGCACTCCGCCGCGCAGAGGTAAGCGTGCACACAGCCCGGATACGGTCTGAAGTAACCGTGCATATACACTTACACTTCATTTGTGTCGTGTCCCGTTTTAATGGCTTTTCCACGAGTAGAAAGTGTCTGTGAATGCGTTATGGGTCCGACTTTCACGTTGGCGGCAGCCCATTCCCTCCGTCCCCCCGGAGCGGAGCGCTGCGGACGGGGCGGCACGGAGACGTTTGGTGCCTGAAAGTGCGGTGGGAAGCGAGACGGACTGGAGATCAACTGCGAGCGTCGCCCGGACTCCGTGTCTGTGCGGTGGATCTATGAATCCAAGAATTCAACTGCCAAACCAGAACCCCAGGTGAAGGCAAAGGGCTCTAACCATGACGACCATCACACCCAGCACAAACATGGCAGTGACCACCCCTGAGCCGCCCCCCCAGCTGAACTCGGCTGTGATCGGAGTGGTGATCGTGCTGGTCGTACTAACGCTGGCAGGCCTGGGCTTCCTGCTGATCCGTTACCTGTGCCACAACAAGGGGGCCTACCGGACCACGGGAGAGCCAGCCCCGGGAGAGGAGCTGGAACAGGGGCCGATCGACAGCAGTgcggaggagaagaaggaataTTTTATCTGATTGGAAGGAGCTGGAAGTGGGGTGTGGAGGGATGCAACTCCCACCCACCCTACAGAACTGTGACAcagccagtggaaaaggggggAACCTGGATCTGGGCCCCATCAGTGACTAAAACCAGGGTACCCATCGCTGCCACCTGCTTTCCCAGTTTCCCAGAACACCCTTGTCTAAAGCGTGCAACCGTATAAGCGGCCTTGGTCGTCTTCCATAATTACAAGCAGGATAAACCCAGGAATACTGTACTGAAGAGGAGGATGTAAAAAGCACAACCCCCCCCTCAGTTAGCATTCCTGATCCACATCATATTTGGATCTCACCTGATCTGGGCAGTGTACAAAGCTGTGCATTGCTGCCTTCAAGTGCCTTAATCAGTTCGATTTGCctataccccccccccccccccccccccccccaaattcaGTCCATCCACAGACGTGCAGTATATGGATCCATTCCTTCCTAGAAGTGGTCAGCTGACGTGGATCTGTTATTATGTAACTGGTCTCAGTTCATGGTTTGATTcagtttgttaaaatgttttacttttttaattcaaaagatGTGGGTTGTAATTGTACTTGTATTActatttaaagctttaaagcaaGAAAGTCAGATGTCATTAAGGGTTTAGTTAGATCATACCTGTACTGTCTTTGGGATTGTTGAATTGACAAACAAAAACCCTatcttatatttttaatttatgaagtCATCTGATTTCTAGAaggtcagttttttttttttcttaaacttaGTGCATTATTATGTGTAGAACTCAATGGAAGCCACAATGGAAATCTGTTTTCACTAGAACATGAGAAATAAACCACTTGAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63706 lncRNA upstream 115448 9194404 ~ 9194638 (+) True G50932
TU63705 lncRNA upstream 116401 9193015 ~ 9193685 (+) True G50931
TU63704 lncRNA upstream 117167 9192530 ~ 9192919 (+) True G50930
TU63703 lncRNA upstream 117709 9191777 ~ 9192377 (+) True G50929
TU63641 lncRNA upstream 315183 8994536 ~ 8994903 (+) True G50878
TU63764 lncRNA downstream 36827 9352978 ~ 9354405 (+) True G50983
TU63777 lncRNA downstream 52981 9369132 ~ 9379579 (+) True AMCG00008707
TU63786 lncRNA downstream 75876 9392027 ~ 9398369 (+) True G51000
TU63867 lncRNA downstream 324605 9640756 ~ 9715167 (+) True G51065
TU63900 lncRNA downstream 475987 9792138 ~ 9794219 (+) True G51094
AMCG00008706 mRNA upstream 487 9290688 ~ 9309599 (+) True AMCG00008706
AMCG00008700 mRNA upstream 27479 9270362 ~ 9282607 (+) True AMCG00008700
AMCG00008701 mRNA upstream 125556 9175620 ~ 9184530 (+) True AMCG00008701
AMCG00008695 mRNA upstream 177848 9123241 ~ 9132238 (+) True AMCG00008695
AMCG00008696 mRNA upstream 188419 9116675 ~ 9121667 (+) False AMCG00008696
AMCG00008708 mRNA downstream 22680 9338831 ~ 9350517 (+) True AMCG00008708
AMCG00008707 mRNA downstream 38941 9355092 ~ 9377055 (+) False AMCG00008707
AMCG00008712 mRNA downstream 73260 9389411 ~ 9391756 (+) True AMCG00008712
AMCG00008711 mRNA downstream 84335 9400486 ~ 9408758 (+) True AMCG00008711
AMCG00008715 mRNA downstream 172344 9488495 ~ 9525687 (+) True AMCG00008715
TU63657 other upstream 187274 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 222119 9081827 ~ 9087967 (+) True G50900
TU63473 other upstream 643538 8450166 ~ 8666548 (+) True G50747
TU63407 other upstream 992484 8313425 ~ 8317602 (+) True AMCG00008664
TU63268 other upstream 1370315 7933829 ~ 7939771 (+) False G50583
TU63913 other downstream 613327 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 613327 9929478 ~ 9931081 (+) False AMCG00008727
TU64057 other downstream 1389327 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 1668739 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 2144212 11460363 ~ 11465488 (+) True G51445

Expression Profile