RNA id: AMCG00008711


Basic Information

Item Value
RNA id AMCG00008711
length 2805
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00008711
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9400486 ~ 9408758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGTGGAGAGACGCTGGCTCTGGTTTTGCTTCTTCACTGTCCAAGGAGCAGTATGAAGCCTGCGATGCCGTTTCTTCTGTTGGCCCTGTGGTTTCCACCTTCTCTGCTGGCACAAGGCAAGGTGCAGTGGGAGGCGCTGTATTTCAGTGATGACACTCAGAAGCTCCTCTTGAGTCCAGTGAAGGCTCCAGAGCCTGGCAGAGTGATTTGGGAGTGGGCGCCACATGATGGTTTGCGGCAACAATACCTCACTCTGGTCGAAACCAGTTttccaagcaaacaaaaattCGATAACAAGAACTTTGGCCAACCCTTGGAGATCATGGGCGGCGTGCTGAAGATCACACAGCCCCGATTCAAGAACGCCGGTTACTTCACTCTGAGGCAACTGGGTCCTCAACCGCAGATCTTGGCACAGTATGACGTGACGGCAGTGCAAGTCTTTCCCAAGACCTCAACTTTAGACCCCAGTGAGGACGTCACACTGGGCTGCAGGGCCTCTAAAGCCAGGGATTCCTACAGTCTCAAATGGAAAACCACCCCTGGATCCGACAGGAGCGGCAGCACCACAGAGCTGAGGTTTAATGAAACATCGTACCTCATAGTCAACCGAGTACACCACAAACCGGGCACAGATACATACGTTTGTGAGCTTCGGCTAAACAGGACCGTGGTTCACAGTAACTCGGCGGCCCTCACTTACACTGTCCAGCAAAACCTGCGCAGTTCTGTGTTCCGAGCCAGTGTGCCACGCAGCAAGATCACCATCGTGCCCAGAATCCGGACGCCCTTAGATcatgaaatcattttaaagtctCCATTCACCGTGCAGTGGGAACCCCGCCTGCTGGCCCAGGACCGCAAAATCATATTCACAGCAGAGTCTTCCGTCTCTGCCAGTGGAGGGCTGCAAGTTTCCCTAACCTGCACGGCCTCTAGTCTCCCGGCCTCCACTCGCCTGCTTTGGATCGACCCCGATGGTAGGGAGGCTGCGGCAACACTGGACCTGCAAAGCAACTCTCTCACTCTGGGGCACCTTGAAATCCAGGCCCAGGCCTCACAGTGGAGCTGTGTGCTTTTTGAAGGAGAGATTCTGCGTGCCGTTTATCCGTACACTCTGCGCATCCCAGACCAGAATTATCACCCCTCAGATGCCATTGCATTGTGGGTGCTGGTGGGATACCTGGGAGTGAAGGTGACAATCTTGGTGTGGCTCTGTTGCCTCTTCTGCAAGTGGGTGGCAGGAGAGCAAAAGAAGCACCAGGCCACACCGCAGGCTAAGGTGGCTGACGGACGGCACGCCGCCTCACCTGGGAGTGCGCCACCTGCGGGGATAATAAGATAACAAGCTGTGGCCAGTGGATCAGAACTGGGTTgccacaaacacaaaccttattttatacttttcctaTAAGCAGTTTATTATGGAAAGGAATGCAACTACCCTGGAATCAAACTGGGGTAACACTTTTGTTTGGGAAAGTATTTGGTTAGATTCCCCAACATAAAAGGTAAAGGGATGTGTTGATACTGATCTGTAATGCATAATGATTCCTGTTGTCCTGATGCACAAGATCAATCCTAGCCGTGTATGGCATGAACAGAAGATGGCGCTAAAGACTTATATTAAggagcaaaaaatatatatatattcaaatagtACTGACTGTATTACATTGTGGTGCCTGCGCTGAGAATGTTGTGAAAAATGCTTTcagatgtaaatatatatatatatataataaaaggaaaatgggAACAGTTACAGTCTTACAACGCTTGGAGGAAAGCCGTGCTTCCTGATCTCAGTGTGGAATACGCCGGTCTCAGATTTCAAGGTTAGGTTCAATTCCAGTTCCAGCACTAACATTGTTGGTAGAAAGCCAAACCAAGGCAGAACTTTAAGAAAGAGCTCATATACCTTGTCCTGTCATCTGGAGATGAGGGCTGGAGGATTTCTATTATAGGATCTGGGCTTTGTCAGAactggcagcagtgtggagaagtggttggggctctggactctggagtggagaaTTGTGGgatcaatcccaggtgggggacactgctgttgtacccttcaGCAAGGGACTGTACCGAGACTGATTCAGTAAGAAAAccgctgtataaatgggtaattgtatgttaaaaaaatgtgatgtagTGTAATaattttaagtcaccctggataagggcatcagTTAAGAAAGCCAGTAAACTGATTCTCTTACGCAGCTGCATAAGAGACAGGGGTTATTAAAAAGGTTTGCAATAATGTCATATCCAAATCAGCTGCTAGAGCCCGAGCAGTGGCTGCCCCTGTACTGGAAGTGTCTCGGTACCCTCCCTGGCCACTGGCACTGTCTCAGTTGGTTTGTGGGCTGAATTTTAAGAGGCCTCATTTCCACAGCTTGGCGCTTACCTAGGGAGACACTGTGTTACAGAACTGAGTCCGctttctgcttctctctccctgtagcTCTCTGCTTCTGTTTAGCTTGGACAGAGGCTCTAATTGAATGGGTTGGCTGCCCCTGTTTTAATAAAAGTCTTTGGCTCTTTTTACAAGCTCCGTAAAAGCTGGGCTCTTACCGCACACAAGGGGTCTCGTCTTGATAAAGCACCACAAGACTGGAGCTATTTTCACAGCGTGCTGCAGGGGAACCCTGAGAGATCGTGCATTTTCATCTCCTGGACTGAAACTTAAAGTaaattttgtattctgtttttaattctctgtgttctgtggatatatatatatatacagtcagggaaaaaagtatttgatcccctgctgattttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63786 lncRNA upstream 2117 9392027 ~ 9398369 (+) True G51000
TU63777 lncRNA upstream 20907 9369132 ~ 9379579 (+) True AMCG00008707
TU63764 lncRNA upstream 46081 9352978 ~ 9354405 (+) True G50983
TU63706 lncRNA upstream 205848 9194404 ~ 9194638 (+) True G50932
TU63705 lncRNA upstream 206801 9193015 ~ 9193685 (+) True G50931
TU63867 lncRNA downstream 231998 9640756 ~ 9715167 (+) True G51065
TU63900 lncRNA downstream 383380 9792138 ~ 9794219 (+) True G51094
TU63911 lncRNA downstream 506736 9915494 ~ 9937752 (+) False AMCG00008725
TU63938 lncRNA downstream 564538 9973296 ~ 9975207 (+) True G51129
TU63944 lncRNA downstream 570640 9979398 ~ 10071199 (+) True G51134
AMCG00008712 mRNA upstream 8730 9389411 ~ 9391756 (+) True AMCG00008712
AMCG00008707 mRNA upstream 23431 9355092 ~ 9377055 (+) False AMCG00008707
AMCG00008708 mRNA upstream 49969 9338831 ~ 9350517 (+) True AMCG00008708
AMCG00008710 mRNA upstream 85180 9313227 ~ 9315306 (+) False AMCG00008710
AMCG00008706 mRNA upstream 90887 9290688 ~ 9309599 (+) True AMCG00008706
AMCG00008715 mRNA downstream 79737 9488495 ~ 9525687 (+) True AMCG00008715
AMCG00008716 mRNA downstream 119140 9527898 ~ 9529672 (+) True AMCG00008716
AMCG00008714 mRNA downstream 123033 9531791 ~ 9537457 (+) True AMCG00008714
AMCG00008720 mRNA downstream 212351 9621109 ~ 9639246 (+) True AMCG00008720
AMCG00008722 mRNA downstream 283333 9692091 ~ 9695072 (+) True AMCG00008722
TU63743 other upstream 84335 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other upstream 84335 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other upstream 84335 9310086 ~ 9316151 (+) True AMCG00008710
TU63657 other upstream 277674 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 312519 9081827 ~ 9087967 (+) True G50900
TU63913 other downstream 520720 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 520720 9929478 ~ 9931081 (+) False AMCG00008727
TU64057 other downstream 1296720 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 1576132 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 2051605 11460363 ~ 11465488 (+) True G51445

Expression Profile