RNA id: AMCG00008718


Basic Information

Item Value
RNA id AMCG00008718
length 408
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00008718
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9579389 ~ 9587169 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTTCTCGCTTGCTTAAAGAACATCAAGCGAAGCAGAATGAGAGGAAAGAGCTACAAGAGAGGCGCAGGCGAGAAGCGATTGCAGCGGCCACCTGTTTAACAGAAGCCCTGGTTGACCACCTCAACGTCGGGGTGGCCCAGGCCTACGTGAACCAGCGCAAACTGGACCATGAAGTGAAAACGCTGCAGATCCAGGCCAGTCAGTTCGCAAAGCAGACGGCCCAGTGGATCATGAAGTGTGCTAAAATCAGTCTGTGCACAGTGTCCCTAATAAATATTTGCTGTCTTCTGCAGGAAATCGGCGACGTGGAGAACTGGGCACGCAGTATTGAGATGGACATGCGGACCATTGCCACCGCGCTGGAGTATGTGCACAAGGGCCAGCTGCAGCCCGCCTCctcctga

Function

GO: NA

KEGG:

id description
K20185 BLOC1S1; biogenesis of lysosome-related organelles complex 1 subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63852 lncRNA downstream 1006 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 53702 9521354 ~ 9525687 (-) True G51044
TU63804 lncRNA downstream 168415 9409759 ~ 9410974 (-) True G51015
TU63793 lncRNA downstream 189228 9389784 ~ 9390161 (-) True G51007
TU63792 lncRNA downstream 189819 9389211 ~ 9389570 (-) True G51006
TU63883 lncRNA upstream 151477 9738646 ~ 9739256 (-) True G51081
TU63909 lncRNA upstream 322442 9909611 ~ 9910800 (-) True G51103
TU63928 lncRNA upstream 340076 9927245 ~ 9931102 (-) True G51120
TU64025 lncRNA upstream 751156 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 1081542 10668711 ~ 10673855 (-) True G51243
AMCG00008719 mRNA downstream 14218 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008717 mRNA downstream 24455 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008713 mRNA downstream 161498 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008709 mRNA downstream 252670 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008703 mRNA downstream 291702 9283550 ~ 9287687 (-) True AMCG00008703
AMCG00008723 mRNA upstream 153115 9740284 ~ 9757947 (-) True AMCG00008723
AMCG00008724 mRNA upstream 178554 9765723 ~ 9794180 (-) True AMCG00008724
AMCG00008728 mRNA upstream 329016 9916185 ~ 9916748 (-) True AMCG00008728
AMCG00008729 mRNA upstream 330032 9917201 ~ 9920176 (-) True AMCG00008729
AMCG00008733 mRNA upstream 346889 9934058 ~ 9948099 (-) True AMCG00008733
TU63794 other downstream 186162 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 919372 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1208059 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1285035 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 986314 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 1090094 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 1090094 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 1093109 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 1093109 10680278 ~ 10682873 (-) True G51241

Expression Profile