RNA id: AMCG00008723


Basic Information

Item Value
RNA id AMCG00008723
length 2668
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00008723
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9740284 ~ 9757947 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTCTCCcccccctgtctgtctgtctctctctctctctctctctctctctctccgtctccttCTCGTCTGTGCGGCTCCATCTCTCACACATTCTCGCACTCGGGACGCACACCATTTCCTCTCAGCTCTGATGGCTGAGCTTGTGAGAGTTCGCAAGAAACACCTCCAGACTCCCATCTGCAGattACGGTGCATGGTGAAGCAGCTGGATGAAAAAGATGTTGACTTTGAAGATCTGAAGAAGAACCTGGATTACACTGCATCTCTCCTAGAAGCTGTTTACATTGACGAGACCAGACAGATGCTAGATATGGAAGATGACCTGCACCAGATCCGCTCGGAGTCCGTCCCCACAGAGGTCCGTGATTGGCTGGCCTCGACCTTCACCCAAAAGGCCCGCCCACCTGCCCGGCGGTCAGATGAGAAACCCAAATTCCGCAGTATCGTCCACGCGGTGCAGGCTGGCATCTTTGTGGAGAGGATGTTCAGAAAAGCCTACACTGCAGCCATTCCCAACCAGCCTTCTGCCGTCATTCAATGCCTCCGGAACATCGACCGGTGGAACTTCGATGTGTACGCACTGAACGCCGCCAGCAAGGGGCACACGCTGCAGACCATCGTCTTTGAGCTGCTCACCAGATACGAGCTCAACACCCGCTTTAAGaTCCCTATCGCATTCCTGATGTCCTTCCTCGGAAACCTGGAGAAAGGCTACAGCAAACACCGCAACCCCTACCACGGCCAGGTCCACGCTGCAGACGTCACACAGACCGTCCACTGCCTGCTATTACGCACTGGCCTGGTGCACTGGCTCAGCGAGCTGGAGGTCCTGGCTGTGCTGTTTGCCGCCGCCATCCACGATTACGAACACACCGGGACCACCAACAACTTTCACATCCACACAAGGTCCGACTACGCCATGATCTACAACGACCGCTCCGTCATGGAGAGCCACCACGTCAGCGCCGCCTTCCGCCTGCTGCAGGAAGACCACATGAACATCTTCATCAACCTCTCCCGGGAAGAATGGGTGGAGCTGCGTGCGTTGGTGATAGAGATGGTGTTGGCCACAGACATGTCCTCCCACCTCCTACAGGTCAAGGCCATGAAGTTGTGTCTACAGCAGCAGGAGAGGATAGATAAAGCCAAGGCGCTGTCTCTTCTGCTCCACACGGCCGACATCAGTCACCCCACCAAGCCTTGGCCGCTGCATGCCCGCTGGACCAATGAAAAACAGGCCCTGTACGTGCAGGAGAAACGGTCCAGACGCCAGCGTCTTTTCCTTATGACTCAGAGCAACCCCTGCTGTAGTTCAGCAAGTCCTAAGAGGCTATGTACTGGGGACAAGGAGGCTGAACTGGGCcttcctttctctcccctctgcGATCGAAAGACAACTTTGGTGGCCGAGTCCCAAATAGGTTTTATCGATTTTATCGTGGACCCAATCTTCTCCTTACTGACTGAAATGGCTGAAAAGATTGTGATCCCATTGGTCCAGGAGAATCCTGCCCAGCCTGACCCCTGCCAGAGATACAGTTCGCTGTGGAAGGAGAGCTCCCGCGGCCTGCAGTGGAGTCTTGCCCACGTCACGGCCGAGCTGGTGAGCTTCCGATCGACGTGGACTCGACACACGGAGGACAACAAGTTCAAATGGAAAGAGCGGGCAGCCAACGGATCAGCAGACCAGAGCTCCATAGAAGAACTCTCTCCCAGTGAGGAAGACTTCTCCGAGGAAGATCCCACAGAGAGCTACTGCGAAGACTAGCATGGCAGACATCCTTGGATACAGACAGCCAGCTTGACATTAAACAGCCTGTCACTCTCTTTTTACATCAGACTGGGGTCTATGAGCCAATCCGGACTGAAACTCGCCCTTGCGCTGTCAAGAGGACGACTCCCTCGAGCCAATCTGGttagggaaaaacaaaaacaacagtagGGATCGAGGTCATTAAGCCGTGACTGAGGTGTCACACTCTTGTGGTACAGATGCGTGACTAAGAAATGTGCGGTTGTTTAGGGGTGATGCATGGGATGAAATTActgttaaaaaagtaaaaagggcCGGGGGGGATTCACTAAGCCATTTATGTATACATTCCACATTTTCATAGCATAACACTTCATCCACTCCAGTTAAGGAGGTGATTTTAAAGGGCTATTTGATATCTGCTGGATTTGTGCTTTGCTTTGAGCAAGAACCTACATGGATTTGATTTCTCCCACTTTTCTGTACGCCAAACCCTGTGGCGGATGTATACATCCCTCAGCCGGTCAGTTGGTCAGTCAGttgtcagtacagtacagccagCTGAGCAAATCTCCGGTCACGCATTATGATGCACTACACATGATGAATCACTGCTGTAAGAGCTGACTTGCATCCGGTGTAGAGGGCGCCTGATTAATAATATCCTGCATGAACAAAATTATGTGATGTCCCTGTTCAACCACAATAAGTGGTTAACATTAACCATGATCCTCACCCACATCACCCACTATCAAATTCACCAGCTTTGGACACCTCGGTGTATCATTTCTTAActcatttctattttatatgaatgtacaGGGAATTTGAAAGGGGTTGGGTTTTGTGTGTGGCTGTtacatgtgtaatatatatatatatatatacagtcagggaaaaaagtatttgatc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63883 lncRNA downstream 1028 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 161901 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 214597 9521354 ~ 9525687 (-) True G51044
TU63804 lncRNA downstream 329310 9409759 ~ 9410974 (-) True G51015
TU63793 lncRNA downstream 350123 9389784 ~ 9390161 (-) True G51007
TU63909 lncRNA upstream 151664 9909611 ~ 9910800 (-) True G51103
TU63928 lncRNA upstream 169298 9927245 ~ 9931102 (-) True G51120
TU64025 lncRNA upstream 580378 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 910764 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 917809 10675756 ~ 10712485 (-) False G51241
AMCG00008718 mRNA downstream 153115 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008719 mRNA downstream 175113 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008717 mRNA downstream 185350 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008713 mRNA downstream 322393 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008709 mRNA downstream 413565 9321577 ~ 9326719 (-) True AMCG00008709
AMCG00008724 mRNA upstream 7776 9765723 ~ 9794180 (-) True AMCG00008724
AMCG00008728 mRNA upstream 158238 9916185 ~ 9916748 (-) True AMCG00008728
AMCG00008729 mRNA upstream 159254 9917201 ~ 9920176 (-) True AMCG00008729
AMCG00008733 mRNA upstream 176111 9934058 ~ 9948099 (-) True AMCG00008733
AMCG00008735 mRNA upstream 193137 9951084 ~ 9965152 (-) True AMCG00008735
TU63794 other downstream 347057 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1080267 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1368954 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1445930 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 815536 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 919316 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 919316 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 922331 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 922331 10680278 ~ 10682873 (-) True G51241

Expression Profile