RNA id: AMCG00008724


Basic Information

Item Value
RNA id AMCG00008724
length 4229
RNA type mRNA
GC content 0.52
exon number 30
gene id AMCG00008724
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9765723 ~ 9794180 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAAATCACACGATCGTGCTAAAGAGCCACTGCTGACCCAGGGTGAGACGCTTGGCCTGAGGGGTTCAGAAGGAGCCCTGGCTGACCATGTCCAGGACAATGACTTACCAGCACAAACTGGCCGAGAAGCTGACCATCCTCAACGAGAGGGGCCAAGGGGTGCTGGTGCGCATGAACTACATCAAGAAGATGTGCTCGGACCCGAAGCTCAAGCCTTCGTGTCTCACAGAAAAGTCCATGGAGACGGCGGTCAAATACATCAACAAGAAATTCCCCAACATTGACTTCAGGGGGAGCAGTCAACAACTGAGCAACATCCAGAGGGACAAATCCGATGTGCTGAAGCATCTGACCAGCTACTACCACTCCTTCCTGGATGTGATGGAGTTCAGGgatcaCGTGTATGAACTTCTGAATACTATCGATGCGTGCCAGTGCTTCTTCAACATTACATTGAACTTTGACTTCACCAAGAACTACTTGGACCTGATTGTGACCTACACCTCCGTTATCATCATGCTATCTCGCATCGATGACAAGAAAGTGCTGGTGGGGATGTACAACTGTGCCCACGAGATGTCCAACGGAAATACGGACCCCGCTTACCCCCGGTTGGGGCAGATGCTCTTGGAGTACGATCACCCCTGGAAGAAGCTAACAGAGGAGTTTGGGCCACACACCAAGtcGGTGACCGAGGCCCTGCTGTCGCTGCAGTTAGTGTACCCGCGCAGGAACCTCCCGGCCGAAGCCTGGCGAGGTGCCCAGCTCCTCAGCCTCCTCAGTGCGCCCGCCACCATGCTGGGCCCCGTCAGCTGCGAAACGATCCCGTGCGAGTACCTGGCCATGGAAGTGATGGAGCGCTGGATCATCCTGGGGTTCCTGCTGTGCCACAGTAGCCTGAACACCAACCCCCCCTCCCAGGACCTGTGGAAGATGGCGCTGCGCAGCGGCATGTGCGTCTCCCTGATCCGGGACGAGGTGCTGTTCTTCCACAAGACCATTGAGGATTTCTTCGACACTCTCAAGGGATACAACAAGCGCATCGCAGATATTAAAGAAGCTAAAGAAAACGTCATAATCAGCTGTGGGGCGATCCACCGAGACAGACGGACCTACTTGCGGGGCGCGCTGAAGGAGCTCACCAATATTCTGGAAGACGAGCCAGGGCTTCTAGCACCCAAGGCCTTGTTTGTCTTCATGGCTCTGTCATTCTCCCGTGACGAGATCCTCTGGCTTGTCCGTCACTCTGAGAACGTCCCCAAGACCAAGACCCCAGAAGACTACATGGACTCGCAGATGGCGGAGCTGCTGTTCTACATGGAGAAGCTGAGGACAATGATGCGCCGCCACAGCCGTATCATCCAGCGCTACCACCTGCAGTACCTGGCTCAGTTCGACGCGCTGGCCCTCAACGACACCATGCAGACCCTGTACGTGTGTCCTGAGGAAGAGTCCGTCCTGATGACCTCCTTCGTGTCCACCCTGTCTGGAATGACGATTAAGCAAGTGGAGAACGGAGAGGAATTCGACTTCCGGGGACTCAGACTAGACTGGTTGAGGCTCCAGTCATACACCAGCGTCTCCAAGGCCCCTCTGAGCCTCAAGGAGAGCCCTGACCTGGCCAAGCTCATGAACATGACCACCTTCCACACCATGATGATGGACAACATACAGGGGCTTCTGCAGGAAACCTCAGACCTTTCCACCTTATGTTTCTACCCACGCATCATGGAGAAGATGTTCAACCAGAGCTGCGAGGAGGTGCAGATGCAGCGATATCTCATCGCCTTCCCGTGGATCTGCTCCCACTTCAGCCAGTGCTCTGACCCACTGTGTCCAGAGGAGGGCTCAGCTTTGGAGAAGAAGAGCTTGAAGTACTGCATCGCTTTCCTGGAGGAGATCGCCAAGCAGACCTGCAATGTCATCATGGAGATATGTGCCGAACAATGCAACCTTAGTGACCAGCTCCTGCCCAAGCATTGCGCACAGACCATTAGCAAGGCTCGCAACAAGAAGCAGAAGAAGCAGACCCCCAGGAAGAACGAGGTGCAGAGTGAGAAGCCAGGCACCGAGAGCCAGAGGAAGGACCGTGCCATCGTTACCAATATGGACAAACTGCACCTGACCCTGACAGAATTGTGTGCCTCCTTCAGCCACTCCCACCACTTCACAGTGTGGGACCACACCATCATCCCTGCCGAGTTCCTCCTTGCTCAGCTCGAGATCCGCCTCGCCAGgaCCATCGTGCGGATGACTGACTACAACCAGTCCACACAGGCGATCTCCCGGCCCTCTGACCTGCTGGCAGGGGTTAGGGCCTACATGACATCCCTGCAAATCCTGACCCGCTACATCAGTGTGGACGTGACGCGGATGTTGAGGAGTTTGCTGCTGCAGCAGACTCAGCCACTGGACAGCCAGGGCGAGCAGACCGTCACAACCCTGTACACCAACTGGTACCTGGAGGGCCTTCTACGGCAAGCAAGCAGCGGCCAGATCATCCATTCCCCTAACATGCGCTGCTTTATGAACCAGTCCAACGAGAACGAGACCAGCTTCAGTGCCCAGGAGTACTCCGACATCAAAGaattgCAGGCCCTGGCAGAACTGATCGGGCCCTATGGGATGAAGTTCCTTAGCGAAAATCTAATGTGGCACATTACCTCGCAAGTCAGTGAGCTGAAGAAACTTGTGATTGAGAACATGGATATCCTGGTTCAAATGAGGTCCAACTTTGACAAACCAGAGAAAATGGCCGATCTCAAGAAGAGACTGCCGGCATCTGAAAATGTCCTGAAGAGGATGACCATCATTGGGGTGATCCTGTCCTTCAGGGCCATGACTCAGGATGCACTCAGAGAGGTTATGCAAAACCACTGTCCCTTCCTCATTGGACCTATTGAGTGTCTGAAGGATTTCATCTCTCCAGAAACAGACATCAAGGTGACCCTCAATGTGTTTGAGCTAGCCTCGGCGGCAGGCGTACCCTGTGAAGTCGACCCTGCTCTCGTCTCCGCTCTGGCCAACATGCGCACAGACAACTCTTCTACAGATGAGGAGTATAAGCTGGCCTGCCTTCTGCTCGTGTACATTGCCGTGTCGCTGCCTCTGGTGGCGGCCATGTTCACCACCCTCAACAAAAACATCGAGGAGCACCTGAAAGAGTTCCTGCTGGTGGCATCGTCCACCCTGCTGCAGCTGGGGCAGAACTTGGAACGGATCGAGAGCAAGAACCGAGAGTCCGTTTACCTCCTGCTGCACTTGATTGTGGAGGAGTCGCCCTTCCTGACCCAGGACATGTTAGAGAGCTGTTTCCCCTATGTCCTACTGCGCAATGCCTACAGGGAAGTCTACAAGGCCTTCATCTTGACCACAGGGTGAAGGGAGCCACAGACCCCAGCAGTCGGCCTCCAGAGCTGGGTGAGGCCACCCTGGCATTTTCTTCCCAGTGCACAGAAGGACTTTCACGCGAGAAACTACATTGAATTAACCCTAATGGGCGCTGGGGCAGCACAGGAACACCCTTCTGCATAAAacccttaattacttaattgatcctGCTGCTGATgagcagttaaaataaattatggataGGCTGAACTGGAGTTTGGAAGGATATGAGAGTAAAAAGTGTCCTGCCCCTGTTCAACCTACTGCATGAACTGGAGGAGACCTAAAAACTTGCCAAAGAAGTGCACCTCTGGATCAAGTCAACCCTGCACAGGTAACAGCAGAATTATGCAATTTCTGCAACTGCATGCATGATTTACTCCCTGCGAAGATGCATTTACAGTAGCTCTAATGAATCTTCAACAGTTTTGTAAGAATGTAAGAGAAAGTGCATGTCTTGCTTCTGTGGCAGTATAAGGTACACCCATGTACTTTTCCACATGATAGACAATATAATTTTTGATGGGGAACTATCTTTACTATCTTTGATAAAGCATTCCAtgcatttttaagcattttccAAATCAACTGCCACTGGTATCACTGTAATCCTAGCAAGATATATAATCTACGttatagattaattaattttggaagAACTAACAACATTCTCAAAATCAGCTTCATAGTAAATGcaccaagaaattaaaaatatattttcatacagCCTACCCATTTATGTTACCAACTGTCTTGGTAATTTTATCTGCAGCAATTTTTGTACACAGTGTGTTAATGacaaagcttttttcttttactaatAAACAGAGGTATTgtga

Function

GO: NA

KEGG:

id description
K05750 NCKAP1, NAP125; NCK-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63883 lncRNA downstream 26467 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 187340 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 240036 9521354 ~ 9525687 (-) True G51044
TU63804 lncRNA downstream 354749 9409759 ~ 9410974 (-) True G51015
TU63793 lncRNA downstream 375562 9389784 ~ 9390161 (-) True G51007
TU63909 lncRNA upstream 115431 9909611 ~ 9910800 (-) True G51103
TU63928 lncRNA upstream 133065 9927245 ~ 9931102 (-) True G51120
TU64025 lncRNA upstream 544145 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 874531 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 881576 10675756 ~ 10712485 (-) False G51241
AMCG00008723 mRNA downstream 7776 9740284 ~ 9757947 (-) True AMCG00008723
AMCG00008718 mRNA downstream 178554 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008719 mRNA downstream 200552 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008717 mRNA downstream 210789 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008713 mRNA downstream 347832 9413698 ~ 9417891 (-) True AMCG00008713
AMCG00008728 mRNA upstream 122005 9916185 ~ 9916748 (-) True AMCG00008728
AMCG00008729 mRNA upstream 123021 9917201 ~ 9920176 (-) True AMCG00008729
AMCG00008733 mRNA upstream 139878 9934058 ~ 9948099 (-) True AMCG00008733
AMCG00008735 mRNA upstream 156904 9951084 ~ 9965152 (-) True AMCG00008735
AMCG00008732 mRNA upstream 176383 9970563 ~ 9975121 (-) True AMCG00008732
TU63794 other downstream 372496 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1105706 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1394393 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1471369 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 779303 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 883083 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 883083 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 886098 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 886098 10680278 ~ 10682873 (-) True G51241

Expression Profile