RNA id: AMCG00008725


Basic Information

Item Value
RNA id AMCG00008725
length 4673
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00008725
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9915494 ~ 9937752 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGATGGCAAAAACAATTTTTATTGTAATAGTTAACATAAAAAGTGCTTACtccttttaagaaaacaaagaaaggtaCAACTGGCATGCATTCATTCAGCGTCCCGATTTGTTCCACCCAAGAGAGGTTTCTCCAATAAACATTGTTACTTAATTCAGGGTTATTCAAAGGCTTACAGACAGCATCCAGGTGTTTGTAGGACAAAGATGTCTGGACTACAATGGACACAGTTGCTTGACATTGGATTCCCACCACACAAGTGTATGTATGCTGAACacattatttagttttcatgCAAAGCCACTGAAGTCTACCGTTAGGAAACCTCCCTCCAGCAAAAGATGAAAGGACTCTGGAATtctctggaaaataaatgaagattGTTGACCCTGCAAGCCCAGCCGATCAACAGGAAAGCCAGTAAGGCAGTGTGAGTGGTCAAGGAGGAGCACTACAGTCTCAGCTTCAGTTGTGTTTCCACACATTATTCCCTTTAAAATAAGGGCACAGCACTCATTTAAAAGGTGCTGCTGTGATGGTTTGATGTAAAGAGACAtccacaaaataatgaattacttCCCATTCTTTTTCTTATGTCATGCGCAGCACATCAACAGAGGATGTGTAAAGTACACGTTGCGTCTGTATAAGTCAGACCTGTATAAGGTGGTGTGTAGTATAACTTGGGCCTTACGAAGAACCGCCACCCTCAGTAGATGAGATTCCATCCTCTCCCCCTGCAGGGCGCCTCCTGAACAGCAGCAGTCTCCGGTCCCAGGCCGTGCTGCCTAGGCTGCGGACCAGCTCCATGCCACAGCTCTGCTCCAGGTGTTTTGTGGCCTGTACTGCCATGTCCCCGCGGATCCCCAAATCCTTGAAATGCTCGAAGTCCCTGCGGCCCAGCTTGCGGAAGCGCCGCGCGGCCGACCTGTAGCACTTCCAGGGCTGGGCCTCCAGCAGCAGGTGGCGGCAGAGAGTGGCCAGCCGGGAGAGCAGGTCGAGCAGGGCCTGATCGCCGTGATTCAGGTGCACCCACATGGTCACCGCCAGGCAGGAGCCGAGGTCGAAGGAGCAACGCCCGAAGCGGCTCAGGTATCCCCCCAGCTGGGCGCGGCAGGCCTGCTCCTGGGTGATGTCAAGGGAGATGAAGTTCACAGTCTGGGGGAAGGGGTTAGCCTGCTGTGCTCTCTGGATCAGCACCTCGTCCAGGTCACAGCCCAGCATGTACAGCTGAGGGTCCCCGGCGCCCTCCATGTGCCCAATTAGGTGCCTGTACAGTGCCACACTTAAATCCCCGGAATTGCATCCCACGTCGAGCGTCAATATGGGCCCGCTGGCTGCGGCGCTGTAGCCCAGATCCTGGAGCAGTGTGGCCGGTATGAGGCTCAAGCGGTTCTCCGGAGGGTTGAAATCATAATAGTTTATAAAATTCCCGTAAGGAGCCGCTCCTGGATCATCCGCCGCTCCCTCACCTATGGAGGCGGCCATCTTTGTCCGGCTTCTTAACCGTTCCGTGTAGAAACACGATTCCTCTGTGCGCAGGACACTCGGCCCGCTTCAAGTTTGTATGTGCAAATTATGCAGCTTCAAGTTATTTTCCTGTTGACAAAACCAATCCGTACTCGAGGAAATGCAGTATCGCACAGTTGGTATGTTAGAGAAGTTAAAACGAATCTGGCAACACTTCTAGATTACATCAGAGGAAATTGCTTCAATtcgtctgtgtttgtttttctgggaAGAATAACGTTGCTCTTCAGATCCGAGGAGCCACCAACTGTCTCTGTTGGGTTCAATGTCACAgGAATCCCAAAAGCCTGCATCAGCGATGGCACAGCGGCCAATACCTTTAGATGACCCCTGCAGTCAGGGTCAGGCGCCGAACAGGCTCCAGATGCTGCACAAAGCTGCACTAAGGGACTGCAGCAAAACCCCCAGTGACCAATATAGCCTGGGGGAGCAGTCTCCCAGAGAGGTGGTCTGTGCCAACCAGTATATAGATCTAATGGTCCTGTCACAGGACTCCCCAACCGAACTGGGCACACTTGCCACTGGGAAAGCACACTTAGAGTTTAAGAAGGATGAGGAGAACATGGAGCTGGATTCGGTTGGTGTGGAGCATTTCTTCAGCAAGGATTTGGAGCAACAACACAACCCCAAGATTGTAGTGGCTGTTGGTGTGGCAGGAGTAGGCAAAACCACAGTTGTTCAAAAACTGACTTATGACTGGGCTTCTGGGAGGCATTATGGCAGCTTTGCTTTTGTGTTCCCCTTCGAGTTCCGGAAGCTTAACCTGATCGAGGAAGAGATGTCCCTCGCCACCCTCGTGATAAAGCAGCACGCGCACCTTGTCCAGGACGCTGTCAGGGAGGCCCTGCAGAGCCCCGAATCAGTATTGTTCCTATTGGACGGCCTGGACCAGTACCATCACGGGCTGGATTTCACAAAGACGCAGCTCTGCTCGGACCCAGAGAAGGTCATTCCCATGCCCCAGTTGGTCGCCAGCCTGATGTCTGGAATACTACTGAAAGGAAGTTCGGTTCTCGTCACCACTAGACCGACAGCCGCCCTGGTGTCTTTGAGGGAGGTCCAGGTTGATCGGTATCTTGAGATCTTTGGTTTCCACAATCATCACAGGAAGGCCTACTTTGACCGGTTCTTTGAGGACACTAGACTTGCAGACGAAGCTTTTCGGCACATAGAGAAGAATGACTTCCTCTCCACCTTGTGCTACAACCCCTCCTTCTGCTGGATCATCTGCTGTGCGCTGAAGGTGCATTTCAGTGCAGGAGAATGCCCTCCAGAGACTTTGACCCATGTGCTGGCCAGCTTCACCACCAGCCTCCTCCTGTCCAAGGGAGAACCTGCACCAAGGGATCTCATCCTCAGACTGGGGAAGATGGCTGTACATGGGATACGCAACGGGACAGGAGTAGTCTCGAAGGAGGAGATGGCCACCTTTGATATCCAGCCGTGTCACACCTCTCCGGTCCTTTCAACTTTCTTACACACAGAAGGAGGCGCTCTGTGCCGAACAGCATCATTTGTCCACCCTACGATACAGGAGTTCTTGGCCGCTTGCTCATTTTTTCTCCATCCATCTGTGAATATGGAAGAGCTGCTAGAAAAGCCACAGGAATTTCTCGACGTCTTCCTGGTAGGTCTTTCCACGCCTCTGGTGAGGAAGCCACTGGAGACAATCCTGGGAGAGTTTGAGCGCGAGCCACTCCAGAAGACCCAGAATTGGCTCAAGCAGACAACCCAGCAAGCAATGCAGGCCTGGGACAAGGATGAGCATCTCCGCTGCTTCCACCTGCTGTACCATAGCCAAAGCGAGAGTTTAATCAGAGAGGTATTTCAAAAGCCAGTCCACATAAACGCTTCATATGCCACGCTGAGCCTTCTGGACTGCACTAGCATTGCGTACGTCGTGAGCAGCTGCGGCAATGTGGAAAAACTGCAGCTAATGGGTACCAGCCTGACGGAGGCCATGACCAGTCGGCTCACGCTGGCATTCAGCTGCTCCGAGAAAATCGGGGCCTTGCGCTCACAGGCATGCCGGCTGACAGAGTTGGACCTGTCTGTCAACGATCTGTACGACCAGGGGGTGGCCCAGCTCTGTGGCGCACTCAAACACCGCGGTTGCAAACTGGAAAAGCTCAGGCTCGCCCGGTGTGAGCTGACCAGTGGCTGCTGTGAGGACCTGGCTTTGGTGCTGCGCTACAGGAGCTCCAGGCTGAGGGAACTGGAGCTCGGCGTGAACCCACTGAAGGATGAGGGAGTGAAGGTGCTGTGGGGGGCTCTGAAGGACCACCGATGCAAACTGGAGCACCTCGGCGTGGAGCTGGCCAGCCTGACCGATGCCTGCGTTGACGAGCTGACCGCCGCCCTGCGGGTGAACCGCTCTCTGAAGTACATCGAGCTGAAGAACAACAACCTGACGGACGCCTCCATCCCCGAGATCCTCAAGGTGTTCCAGGACAGCCCCACGCTCCAGAAAATCAATGTACGCTACAACAACTTCAGCGAAGAGGCTCTGATGATGCTGGACGAATGCGACCGAGAGATTGAATACTGAGGCTGGAGAATCAACCTCAGGAGGCCACAAGCAACAGACAGAAAAGGATGGGGAGGAGAAAACAGGTGGATTTCTGAGGGCTATCGCTTTGTTATACTGGAGAAACTGGGATTAAAGTTACTGTTTCtcagatgttttcttttgcacctgtggtttttttttttcttcggtTGCATCATCTAGCAAAGAGGCAAATTTTCATACTGTAGAGCTCGGCAATTAACAAATCTGCTTTCCCTTTCCTCACAGTGACACTGCAGTACAAGACTTAATTGTGCAATTATGTCAAAATTGCAGCATTTGCCCTCAACATTATGACACTTGAATTAAGGAATTTGGTTCCTTAAAGCTATGCAACACTtcaacttaaaacaaataaaaaacagcactaTCTTGCACTGCACATTTATTTCTTACACACAATGCCGTTTCCTGAAAAGTATACAAGACTTCAAAGTATGTGTCTGGAATTGCTACAGGTGCCACTAAAGATAGCATCCTCATGACATCGTCAGGCAGGATAGGGTTGGTAAATTTGCACCACTGTAATGAAAAGGCTTGGAGGTAAATAAAAACGCTACATTGGCAAAAAGG

Function

GO: NA

KEGG:

id description
K25191 BCDIN3D; RNA 5'-monophosphate methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63900 lncRNA upstream 121275 9792138 ~ 9794219 (+) True G51094
TU63867 lncRNA upstream 200327 9640756 ~ 9715167 (+) True G51065
TU63786 lncRNA upstream 517125 9392027 ~ 9398369 (+) True G51000
TU63777 lncRNA upstream 535915 9369132 ~ 9379579 (+) True AMCG00008707
TU63764 lncRNA upstream 561089 9352978 ~ 9354405 (+) True G50983
TU63938 lncRNA downstream 47400 9973296 ~ 9975207 (+) True G51129
TU63944 lncRNA downstream 53502 9979398 ~ 10071199 (+) True G51134
TU63971 lncRNA downstream 294337 10220233 ~ 10222915 (+) True G51157
TU63989 lncRNA downstream 349285 10275181 ~ 10281982 (+) True G51168
TU64049 lncRNA downstream 632743 10558639 ~ 10563099 (+) True G51209
AMCG00008726 mRNA upstream 4721 9861819 ~ 9910773 (+) True AMCG00008726
AMCG00008721 mRNA upstream 179756 9704582 ~ 9735738 (+) True AMCG00008721
AMCG00008722 mRNA upstream 220422 9692091 ~ 9695072 (+) True AMCG00008722
AMCG00008720 mRNA upstream 276248 9621109 ~ 9639246 (+) True AMCG00008720
AMCG00008714 mRNA upstream 378037 9531791 ~ 9537457 (+) True AMCG00008714
AMCG00008727 mRNA downstream 1491 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008736 mRNA downstream 291442 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008738 mRNA downstream 332550 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008737 mRNA downstream 351054 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008742 mRNA downstream 385686 10311582 ~ 10312097 (+) True AMCG00008742
TU63743 other upstream 599343 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other upstream 599343 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other upstream 599343 9310086 ~ 9316151 (+) True AMCG00008710
TU63657 other upstream 792682 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 827527 9081827 ~ 9087967 (+) True G50900
TU63913 other downstream 3582 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other downstream 3582 9929478 ~ 9931081 (+) False AMCG00008727
TU64057 other downstream 779582 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 1058994 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 1534467 11460363 ~ 11465488 (+) True G51445

Expression Profile