RNA id: TU63914



Basic Information


Item Value
RNA id TU63914
length 626
RNA type TUCP
GC content 0.47
exon number 2
gene id AMCG00008727
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9927387 ~ 9931515 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTACTTCAGACTCACGTGTCAGAGAGCACTGCACATAACACTGTGACATTGAAAGTAGCTCTTCCACTGAACAGTCGCAGTCTGGTCGCCATGGTCCTGGGAAAGCGCCTGGCAGACGTGGGATACCGGGTCTTCTCCGGCTCCATGATGGTGCTCACGGTTTACGCCGGATACCTGTGCGCCCATCGCGGGTACCGCTACATGCAGCGGCAGAAAGAGCTCAAACTGGCTGCAGAAACCCAATCAGAAGAGACCCTGAAAGACTGACAGGCGCTTAGCCCCACCCCTTCCGTGCTAAATACCCCCATATAATGAGAATTGTTTGTTTGGAAACGTTGGCAAGTTTGGGGTTTGTAAAAAGGGAGTcaacatgtatacatttgttttagtgcACATATGATAAAGCAGAGTCTTTCTAAATGATTGTAATCAAGCCCCCTCTTTTGACCTGGGTGGATGCTCATTGTGGAGTACAAGGCTGTTTATTAAAAGGGGTTCAGATGCATCCTGTTGATATATGCTTTTGCCTTACTCTTGGTACTGTATGAGAGTGTGGAAGAGATACCAATACCTGGCACTGGATCATATACTGTAATCTGAAgtcattaaatcattttttcttgga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63900 lncRNA upstream 135259 9792138 ~ 9794219 (+) True G51094
TU63867 lncRNA upstream 214311 9640756 ~ 9715167 (+) True G51065
TU63786 lncRNA upstream 531109 9392027 ~ 9398369 (+) True G51000
TU63777 lncRNA upstream 549899 9369132 ~ 9379579 (+) True AMCG00008707
TU63764 lncRNA upstream 575073 9352978 ~ 9354405 (+) True G50983
TU63938 lncRNA downstream 42215 9973296 ~ 9975207 (+) True G51129
TU63944 lncRNA downstream 48317 9979398 ~ 10071199 (+) True G51134
TU63971 lncRNA downstream 289152 10220233 ~ 10222915 (+) True G51157
TU63989 lncRNA downstream 344100 10275181 ~ 10281982 (+) True G51168
TU64049 lncRNA downstream 627558 10558639 ~ 10563099 (+) True G51209
AMCG00008725 mRNA upstream 3582 9915494 ~ 9925896 (+) True AMCG00008725
AMCG00008726 mRNA upstream 18705 9861819 ~ 9910773 (+) True AMCG00008726
AMCG00008721 mRNA upstream 193740 9704582 ~ 9735738 (+) True AMCG00008721
AMCG00008722 mRNA upstream 234406 9692091 ~ 9695072 (+) True AMCG00008722
AMCG00008720 mRNA upstream 290232 9621109 ~ 9639246 (+) True AMCG00008720
AMCG00008736 mRNA downstream 286257 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008738 mRNA downstream 327365 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008737 mRNA downstream 345869 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008742 mRNA downstream 380501 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008745 mRNA downstream 680302 10611383 ~ 10618165 (+) True AMCG00008745
TU63743 other upstream 613327 9310086 ~ 9316151 (+) False AMCG00008710
TU63744 other upstream 613327 9310086 ~ 9316151 (+) False AMCG00008710
TU63745 other upstream 613327 9310086 ~ 9316151 (+) True AMCG00008710
TU63657 other upstream 806666 9116737 ~ 9122812 (+) True AMCG00008696
TU63666 other upstream 841511 9081827 ~ 9087967 (+) True G50900
TU64057 other downstream 774397 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 1053809 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 1529282 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2784413 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2911634 12842715 ~ 12846233 (+) True G51756

Expression Profile