RNA id: AMCG00008728


Basic Information

Item Value
RNA id AMCG00008728
length 564
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00008728
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9916185 ~ 9916748 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGCGCCGGGGACCCTCAGCTGTACATGCTGGGCTGTGACCTGGACGAGGTGCTGATCCAGAGAGCACAGCAGGCTAACCCCTTCCCCCAGACTGTGAACTTCATCTCCCTTGACATCACCCAGGAGCAGGCCTGCCGCGCCCAGCTGGGGGGATACCTGAGCCGCTTCGGGCGTTGCTCCTTCGACCTCGGCTCCTGCCTGGCGGTGACCATGTGGGTGCACCTGAATCACGGCGATCAGGCCCTGCTCGACCTGCTCTCCCGGCTGGCCACTCTCTGCCGCCACCTGCTGCTGGAGGCCCAGCCCTGGAAGTGCTACAGGTCGGCCGCGCGGCGCTTCCGCAAGCTGGGCCGCAGGGACTTCGAGCATTTCAAGGATTTGGGGATCCGCGGGGACATGGCAGTACAGGCCACAAAACACCTGGAGCAGAGCTGTGGCATGGAGCTGGTCCGCAGCCTAGGCAGCACGGCCTGGGACCGGAGACTGCTGCTGTTCAGGAGGCGCCCTGCAGGGGGAGAGGATGGAATCTCATCTACTGAGGGTGGCGGTTCTTCGTAA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63909 lncRNA downstream 5385 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 176929 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 337802 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 390498 9521354 ~ 9525687 (-) True G51044
TU63804 lncRNA downstream 505211 9409759 ~ 9410974 (-) True G51015
TU63928 lncRNA upstream 10497 9927245 ~ 9931102 (-) True G51120
TU64025 lncRNA upstream 421577 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 751963 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 759008 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 759008 10675756 ~ 10712485 (-) False G51241
AMCG00008724 mRNA downstream 122005 9765723 ~ 9794180 (-) True AMCG00008724
AMCG00008723 mRNA downstream 158238 9740284 ~ 9757947 (-) True AMCG00008723
AMCG00008718 mRNA downstream 329016 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008719 mRNA downstream 351014 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008717 mRNA downstream 361251 9531833 ~ 9554934 (-) True AMCG00008717
AMCG00008729 mRNA upstream 453 9917201 ~ 9920176 (-) True AMCG00008729
AMCG00008733 mRNA upstream 17310 9934058 ~ 9948099 (-) True AMCG00008733
AMCG00008735 mRNA upstream 34336 9951084 ~ 9965152 (-) True AMCG00008735
AMCG00008732 mRNA upstream 53815 9970563 ~ 9975121 (-) True AMCG00008732
AMCG00008730 mRNA upstream 62739 9979487 ~ 9998091 (-) True AMCG00008730
TU63794 other downstream 522958 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1256168 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1544855 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1621831 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 656735 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 760515 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 760515 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 763530 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 763530 10680278 ~ 10682873 (-) True G51241

Expression Profile