RNA id: AMCG00008729


Basic Information

Item Value
RNA id AMCG00008729
length 660
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00008729
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9917201 ~ 9920176 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACAGCCATCTTCCCCAGTCTGAGGATGAGATCCCTTGGTGCAGGTTCTCCCTTGGACAGGAGGAGGCTGGTGGTGAAGCTGGCCAGCACATGGGTCAAAGTCTCTGGAGGGCATTCTCCTGCACTGAAATGCACCTTCAGCGCACAGCAGATGATCCAGCAGAAGGAGGGGTTGTAGCACAAGGTGGAGAGGAAGTCATTCTTCTCTATGTGCCGAAAAGCTTCGTCTGCAAGTCTAGTGTCCTCAAAGAACCGGTCAAAGTAGGCCTTCCTGTGATGATTGTGGAAACCAAAGATCTCAAGATACCGATCAACCTGGACCTCCCTCAAAGACACCAGGGCGGCTGTCGGTCTAGTGACATCAGGCTGGCGACCAACTGGGGCATGGGAATGACCTTCTCTGGGTCCGAGCAGAGCTGCGTCTTTGGCCTCCCTGACAGCGTCCTGGACAAGGTGCGCGTGCTGCTTTATCACGAGGGTGGCGAGGGACATCTCTTCCTCGATCAGGATCTGGGCTACAGCGCCGCAGCCAGCGGGCCCATATTGACGCTCGACGTGGGATGCAATTCCGGGGTGAGTGAGTCACAGTGCATTGTGTCCCTGCGCCTGCAGTCTGCGCAGCTGGGTGACGGGCTGCGCTCCAGCGTGTGCGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63909 lncRNA downstream 6401 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 177945 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 338818 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 391514 9521354 ~ 9525687 (-) True G51044
TU63804 lncRNA downstream 506227 9409759 ~ 9410974 (-) True G51015
TU63928 lncRNA upstream 7069 9927245 ~ 9931102 (-) True G51120
TU64025 lncRNA upstream 418149 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 748535 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 755580 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 755580 10675756 ~ 10712485 (-) False G51241
AMCG00008728 mRNA downstream 453 9916185 ~ 9916748 (-) True AMCG00008728
AMCG00008724 mRNA downstream 123021 9765723 ~ 9794180 (-) True AMCG00008724
AMCG00008723 mRNA downstream 159254 9740284 ~ 9757947 (-) True AMCG00008723
AMCG00008718 mRNA downstream 330032 9579389 ~ 9587169 (-) True AMCG00008718
AMCG00008719 mRNA downstream 352030 9562900 ~ 9565171 (-) True AMCG00008719
AMCG00008733 mRNA upstream 13882 9934058 ~ 9948099 (-) True AMCG00008733
AMCG00008735 mRNA upstream 30908 9951084 ~ 9965152 (-) True AMCG00008735
AMCG00008732 mRNA upstream 50387 9970563 ~ 9975121 (-) True AMCG00008732
AMCG00008730 mRNA upstream 59311 9979487 ~ 9998091 (-) True AMCG00008730
AMCG00008731 mRNA upstream 95548 10015724 ~ 10034597 (-) True AMCG00008731
TU63794 other downstream 523974 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1257184 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1545871 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1622847 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 653307 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 757087 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 757087 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 760102 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 760102 10680278 ~ 10682873 (-) True G51241

Expression Profile