RNA id: AMCG00008732


Basic Information

Item Value
RNA id AMCG00008732
length 879
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00008732
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9970563 ~ 9975121 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTCGGCCATCGCCAAGATAGTGGGCGTGAACACGGCAGCGCTGGAGAAGTTCGACACCGCAGTCAACATGTGGGTCTTCGAGGAGATGGTCAGCGGCCGCAAGCTGACCGAGATCATCAACACAGAGCACGAGAATGTGAAATACCTGCCCGGACACAAGCTGCCCACAAATGTGGTGGCCATTCCGGATGTGCTGGACTCGGCTGCAGATGCGGACATCCTGGTGTTCGTGATTCCTCACCAGTTCATCAGCAAACTGTGCGACACTCTGAAAGGCAAGATCAAGAAGGATGCTATTGGGATCTCCCTCATCAAGCTGGGAATTAACATGAGTGTGTTGATGGGCGCCAACATCGCCAATGAGGTGGCAGATGAAAAATTCTGCGAGACGACCATTGGCTGCAAGAACAAGGAACAAGGAGCTTTGCTGAAGGAGCTCATGCAAACCCCCAACTTTCGCATCACAGTGGTGGAGGAGGCCGATGTGGTGGAGATCTGCGGTGCCCTCAAGAATGTGGTGGCGGTGGGGGCGGGTTTCTGCGATGGCCTGGGCTTCGGAGACAACACCAAGGCAGCAGTGATCCGGCTGGGCCTGATGGAGATGATTGCCTTCGCCAAGTTGTTCTGCAAGGCTGGCCCCGTGTCCTCTGCCACCTTCCTGGAGAGCTGTGGGTCTATTGAGGAGCTAGAGAAGGAAATGCTGAATGGCCAGAAGCTCCAGGGTCCCCAGACCTCCGCTGAAGTCAATCGCATCCTCAGTCTCAAGAAAATAGTGGACAAGTTCCCCCTTTTCAATGCTGTTTACCAGATCTGCTACAAAGGACATCCCGTTACCGAGTTCATCAGCTGTCTGCAGAACCACCCTGAGCACATGTAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63928 lncRNA downstream 39461 9927245 ~ 9931102 (-) True G51120
TU63909 lncRNA downstream 59763 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 231307 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 392180 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 444876 9521354 ~ 9525687 (-) True G51044
TU64025 lncRNA upstream 363204 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 693590 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 700635 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 700635 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA upstream 700635 10675756 ~ 10712485 (-) False G51241
AMCG00008735 mRNA downstream 5411 9951084 ~ 9965152 (-) True AMCG00008735
AMCG00008733 mRNA downstream 22464 9934058 ~ 9948099 (-) True AMCG00008733
AMCG00008729 mRNA downstream 50387 9917201 ~ 9920176 (-) True AMCG00008729
AMCG00008728 mRNA downstream 53815 9916185 ~ 9916748 (-) True AMCG00008728
AMCG00008724 mRNA downstream 176383 9765723 ~ 9794180 (-) True AMCG00008724
AMCG00008730 mRNA upstream 4366 9979487 ~ 9998091 (-) True AMCG00008730
AMCG00008731 mRNA upstream 40603 10015724 ~ 10034597 (-) True AMCG00008731
AMCG00008734 mRNA upstream 84182 10059303 ~ 10065334 (-) True AMCG00008734
AMCG00008740 mRNA upstream 207998 10183119 ~ 10193265 (-) True AMCG00008740
AMCG00008739 mRNA upstream 246299 10221420 ~ 10257851 (-) True AMCG00008739
TU63794 other downstream 577336 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1310546 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1599233 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1676209 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 598362 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 702142 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 702142 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 705157 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 705157 10680278 ~ 10682873 (-) True G51241

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021352 True 2451 mRNA 0.42 9 NC_007127.7 39248655 ~ 39267185 (-)