RNA id: AMCG00008734


Basic Information

Item Value
RNA id AMCG00008734
length 798
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00008734
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10059303 ~ 10065334 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTATTCAGATCTTCTGCACCATCTCCTTCCAGGCGGACGATGACTGGAAGAGCCAGAAGGATGGAGAGGACCGCTACGGGAATCCAGGCTGGGACAGGGGCAGTGAGGGgcgagaaggaggaggagaaggagaagagggggaggaagaggaggatttTGACGAGGACGACGAGGACCTGAGTGACGTGGAAGACTTGGCCAGCTTTGCAGGCAACTGCTCTCTGCATGGGGCCAACCACGTGTTTGTGGAGGGGAAGCAGTTCGGTGTGCGACAGGGGCTGTGGGCCACAgtcttcctcttctcctttgCTATGTTTTTATACCAGGTGGTGGACAGGGTGATGTTCTACCTGCAGTACGCCCATGTCACCACCCTGGACGAGCTGGACACCTCCATCATGACCTTCCCCGCCATCACCTTCTGCAACTACAACACCCTCCGCCGCTCCCAGCTCAGCTACAACGACCTGCTCTTCATGGCGCCCCTGTTGGGCTACGAGGAGAGCATGGCCCCAGGTATCACCCTGGCCCCCGAGCCGGACCGCCAAGGGGCCGGATTTAGCATCGCTGAGGTCTTCAACCGCACCAGGTACCGCATCGAGGACATGCTGCTGGAGTGCAAGTACCGGGGCAAGGACTGCGGAAGCGAGAACTTCAGAGAGCTGAACTGCTTTGTACCCTGCTTTCTGCCCCTGCTCCTCTGCTGCCCAGCGTCTGTAGCCTGTCGCTCTCTGCGAGGCGACTCCACTCATGGCTGCCGCTATCTCTCTGTGCTGGGTCCCGACAGACTGTGA

Function

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63928 lncRNA downstream 128201 9927245 ~ 9931102 (-) True G51120
TU63909 lncRNA downstream 148503 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 320047 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 480920 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 533616 9521354 ~ 9525687 (-) True G51044
TU64025 lncRNA upstream 272991 10338325 ~ 10343165 (-) False AMCG00008741
TU64116 lncRNA upstream 603377 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 610422 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 610422 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA upstream 610422 10675756 ~ 10712485 (-) False G51241
AMCG00008731 mRNA downstream 24706 10015724 ~ 10034597 (-) True AMCG00008731
AMCG00008730 mRNA downstream 61212 9979487 ~ 9998091 (-) True AMCG00008730
AMCG00008732 mRNA downstream 84182 9970563 ~ 9975121 (-) True AMCG00008732
AMCG00008735 mRNA downstream 94151 9951084 ~ 9965152 (-) True AMCG00008735
AMCG00008733 mRNA downstream 111204 9934058 ~ 9948099 (-) True AMCG00008733
AMCG00008740 mRNA upstream 117785 10183119 ~ 10193265 (-) True AMCG00008740
AMCG00008739 mRNA upstream 156086 10221420 ~ 10257851 (-) True AMCG00008739
AMCG00008741 mRNA upstream 274833 10340167 ~ 10370316 (-) True AMCG00008741
AMCG00008743 mRNA upstream 407196 10472530 ~ 10489766 (-) True AMCG00008743
AMCG00008744 mRNA upstream 495532 10560866 ~ 10574901 (-) True AMCG00008744
TU63794 other downstream 666076 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1399286 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1687973 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 1764949 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 508149 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 611929 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 611929 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 614944 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 614944 10680278 ~ 10682873 (-) True G51241

Expression Profile