RNA id: AMCG00008737


Basic Information

Item Value
RNA id AMCG00008737
length 7176
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00008737
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10276950 ~ 10285158 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACATGTATAGGCTTTAAAGAAGTACTGAAGGGTGTGGCGGGTTAAAGAATGATGTCCCGCAGGAAAAAACGTTTGGGAGCAAACCGGGCCAACAGTATAGGATGGGTCGACTCCTGTCACTTCCCAAATAACTGCTGAGGTCAGTGGGAGCCACGgatttaatgcattgttttggaAAAGGCATTCTCAGATCGGCTACTCTTAAAACAGCACGTTGTTCCGTTTTCAAACCAAAGGCAGGAACAGCATGACTCTATCTAGattacagttgttgtttttttcaggacAATTAGAGCATGCAAAGCAAAGGGGTAAAACTAAATTGACCTGgcaatttatttagtttttaaatgggGGGTTTATctagcaaaaaagaaaaatcaacaaaatatgaCCTAAAAATATGAGATATTTGATCTCTACAACTTTGCCAGTTTTGAGGGCTGTGTGGGAGCAAACTGATTTTGTTCCCCAATCAGTGAATTAACAATGTAGGACAGTGTTTCAGTGCTGGTGTGTCAGGACTGGTTAGTGGAATCAACAGGATTTGAAGGTTGGAGGAGTGGAGATACTCTGCACCAGCTGATGCACATTTTGCAGGGTGGGCTGTGTGGCTCTGTATAGCCCTGCAACAGGAAAAGTGGAATTGTTTAataaacctgaaagctttgggCAGTTGCTAAGCTATAAAGTGTAGCTGAGGTAGCGATccttaaacagatgttttttcgGTCATATCGGGGGGGGGATTTGAGTGTTGTGCACATAGACGGGGTGGTCCAGTGCTTAAGCTGGTGACCAGGTGCTCAGATTCTTGATGGCGTACAATTAGAACAatcctttattttctctctcgcATTGTTCATTTGTGTGGCAGACACATGTATCCCAGGcattatttgctgttttttaatgcatcagGACGATGTTCAGGAggttatattgatatatttgttttgaattgacCTGgctttatattaaacattcttGTTTCACAACCTGGCTGTTGATTTGTTTGCCCTTTAGTCAGTGCAGTCGTTGAGAGGCAGCCTGACTGTGCCAGCCTCTCCATCTGGGCACCGTGCCAGCCCTGGACTATCACACGGGACCCTGGCACCCCCATGCCAGCGACTGTCCTTCTGAAAAGCTGTGCACAGTTCCAGCTCTGCAGAGTTGCTGTGCTCCTGATTTTAAAGTTATaacatttcccttttttgttccttttcgcTTGTTAATTATCGTTCGGTTGCAGTTGCCGGGGGTTTCTCTGTCGCTGTTGTTTGACTGAGACGGGGAAACAATTCAGTGATGCACACTTTGTTGCATCCCACTAATATGCTGTGCAAGACTGACATCACTTCCTCTGCAAGTATTATGAGGACCCCTTTAGAAACTCCtgatattttttcagattttcaaatTGTCAGTTAATAGATATGGCAGTGAATTAGCCTTTCTTTATTCTGAGAGACCTAACACTATACACCATTGTATTGCATCAGTAGGCTACCTGCCACATTGTACGccgctgaaatgtttttgtttccattgtgGACCCAAAATTGTGGAACAGACACGCTTGCGAAAAGTAATATATTCATCATTCTTAACCCCTAAAGTCTGTGTTACACTGAGAATGCAGGCGGTAAATGTGGCTGGCTGTTTCAACCGGCAAAGAAGACGTCACCTCATcggtctctctccctccttcatttttttaatgcaatgaaTCCATTTCGTCAGTTTCAAAAGGAGATGCCTGTCAGCAATTGTCAGTCTGCGGACAAGGAGTGTTTTGAGAACCTGTAATTAGGAGCGGTGTCTGGTGGGGCAGGTCCCTGTCCCATGCTGCTTCTGCATTATGTGTGTCAAGGAAAACAAAGGGGGTTCTTGTCTTAGGATATAGCATGGGAGATATGGAGGCATGCGAGAGAGAACCAGAGCTGTCGTGTCTCTTTAACAAGTTAAAAACATGGGCCCCTTGCATGAGAAGCTCAAATCATAGCTGGCCAGGCTGAAAATCGATATTACCAACAGCAGTATAAAAAAGGACCCACACTGTGACTGTTGGGTTGTAGTAGAGCTCATGTGCTATGTAGAGCTTTTGTTTGCGAAGGGCCCCGTAACTGCCAGGATGGGTTGCAATATCCTGGACCACAGTGTACAGAATGGGCATGGGTTACACTTTATGGGGAGGGTCTGGACGTCTACCAACATGATAATGCTGTCAGTTGGGAGTGTAAGGCAGTGTTTCAAGGAGTAAGGCATTGAAAACAACTTGATGGCCCTGACCTCAACTGTGTAGATTAGAACACGACCGTGATCAACTGGAACAGTGAACCtggaccaaaaacaaaaaccctgtaAATACCAACGTCTCTCGCTAAGCTGGTAACTGCAGTTTTGTGACAGAAAGGCAGAGTATTGTTCTAAACCTCTGCCTAGACcctattaaattaatttgaaatcacTGTCGGTTGCATCCTGTTTGTTAcgtaatacattttgtaatgaagTGTACTCTGCTCCACTCAAAAGACATACAAAGTCCTCAATTCAACCCGAGCCCTACTGGCATCACTCAGCAAATTTGGGTTTGAGAACCATGActaagtttaattttgtttttgtggataTAACTTCTTGTGACCGGACATAAAAAAGGCCCTTCTGCAGCTCGCGTTTCCTGTTTAGGTCACAGGCCGATCGGCAGCTGGGGATCGAAACAGGAACGGGGTCCAGTTTACGTTCCCTTTGAAAGATTGTGCCGAGTCATGCTAGGCCCAGCAGAGCCCACATGACAAGGGCTGCCCTGCTGAGTCATGTTGTGAGGACTCCTATAGTCAGCAATCCAGAAGAGAGCGGGTCACGGTTACAGTAGCCTCTCATCAATgtcagacattaaaaaaatatataattatgattgtaaaaaaaatgatatccCAAATACACTTTTGTCTTTAGCATccatattgttgtttgttttctgtggagTCAAACGCATGCAAGAGGCTCTTCCTCCCTGCGTCTCGTGAGGCACTGGAGGGATTTGAGAACACGGTGTGCTGTGGAGGCTGATGAATGACACACTAACTCTTTCAAAGGACTCTTTCCCAGCATTTCAGTGGCTCGTGCCTTGCAAGGAAAGCAGGTATTGTGTTTGAAGCCAAGAAATACTTCCCCAGAGCCGGAAGAACTGGAAAAGCCCTTCAAACTTAATTGATCTGTTGAGGCGAGAATTTCTCTCTGGCATTACATATGTCTTGCAGTACCCAGTGACTGTAACTGACTCTTAGGAGGATTAGATGCTGGCAGTCAACTTATGTTATAACTTAACCTGTGATTTTTACTGAATACAAACCcatcctttcatttttttaaacccccTCTCCGGTCTGGGCGCTTCCTGTGTGTTAGTTATTCCAGTGGAGGGCAGCACACGTTAGCTTGATGTAGCAGTTTAATATGCAGAGTCAGGCCAGAGAGGGAACCACATTTTAGGATCTGGGGAAGTTATAAAAGTCATAAATCACATGCATCTTATATGTATTTCGCTGACGGCATGATTTCCATCGTGTTTGATAAGAGTGGAAcagatgttttagttttgttttctgggtGTGCTGGCTCTCTGGGCCCTGATCACTCACATCATGTATGTGCAAGATTACTGGCGCACCTGGCTGAAGGGACTCAAGTTCTTCCTCTGCATTGGGGGGCTGTTCTTCGTGTTGGCGGTGGTGGCCTTCGTCACCTTCCTCTCCCTCGCCATCACCCAGCACCAGTCGTTGACCGATCCCAAGAGCTACTACCTGTCCTGCGTGTGGAGCTTCCTCACTCTGAAGTGGGCCTTCCTGCTGGGCCTGTACTCGCACCGGTATCGCAAGGAGTTTGCCGACATCAGCATCCTGAGTGATTTCTGAAGGAAAAGTGAGACCTggggtgaaagagagagagagtgtgagaaaGGAGACAGGAGATAGGGTTGATGCTGTGAGGGGAGCCTAGGGTGTCCTTGATTTTCTgcccttcccccccacccacccactccTGCGTTGGGCTGTACTTGATTGCCACAGAGACACCAGGGACAGGGCTTCAATTCAGCTGGGTGATCTCCtttccttgatttttttttaatacatttctttttgtataacaatatatatatatatatatatatatatatatatatatatatatggttctCCTGTGAGTCACATGTGCTGATTGTTTAGTGCAGATCTTGCTTTGTTTCAGCTTTTGTTCCCCCCCAATCTGTTCAAAAAGGTCCTGTCCCAAGACATGCAGAGTTCAGAGGCGGAAGGATCAGAGTCCATTCtggttgtgtttttgaaagcaacAAAATTCTAGATCACCTGACTAATCAACACAATATAGGAAATTAGAAACCCTTCAGTGGATTCTGCTTATAGCAGtgtatttaattacacatttaaaatcactCACGACAGACTCTGTTACCGTTCTCTTCAAAAATACGTCTACAGATGGACAGTATTTGCTCGATTGATAGACTATTATTAGCCATGTGACATCTGAAAATGCTTGTAAATCGCTTGCAATGATCCTGTATCTCAATGGGCAGTGTCGCTTTGTAACAAGGTAGGAAACAACGTTTTAGCAGTTCACTGATTGCAGACTGgaggtttttttcttcttttcagccAGCGAGGTGTAAGGAGAGCAAAGTCATTGCTTTGACATATGTGGTCACGTTCAAAAGTATTCATGACCCTTGGTACAAATGGACATAAATGCATCATGCTTATATAGCCATTTAGAAAAGTGAActgtttctttcctttcctctgtGTGGCTGGGCTCCCCATCTtgtgtgtgaaagtgaaatCTCCTGGTTACTGTGGTCTGGGTCTGAGGAATCATGTCACACAGACAATGGCTACTGCTTTAGCCAGCTCCCTCTCTGCCTAGTTCAGtctcatttgttttcctgatttcccTGTGGTGAAAACAGAGATGTACTTTgttctgggtttgtttttttccccactgatTGACGCTCTTCTAAATCTGCCACACGACACCCGACAGCAAACTGTCGAGTGAGAAtacaattgtatgtaaaaaaaaacaatgtgatgaaTTGGAACAAGTGTAAGTCGCCCCCGCTaatggtgtctgctaagaaatgtaagaataataataataataataataataataataataataataataaatacagccaTGGGAGAAGAGTGCTGGGCTGCTCTGCCAGAGGGTTTTGGATGATGTGGGGGGGGCAAAAACATATTCTAGGCTGGATGAGAGCGGGTATCTGTAAATTTGGATTTGggcattaaatataaaacaaaatatgctaCTGTTCTTCTCTGGATAAGATTGTCtgccaaggaaaaaaaatatttttaaatgtatttaatattttaacttttatttatgttagttttacatttttggcaTTAAAGAGACGAGCAAAACTCAAGTCTGATAATGATTTTggattgggggaaaaaataaaatccacattaTGACGATCTTCCAGCCGGATGTCACTGTAACTGGACTCTCCCCTCCCTGCTTGGCAGAAGACAGTAGATAGGCAGTAGAGAACCCTTCGGGGGATACAATGCAATGCAGAACTGCGGTCGAATACTGTAGGGAATATACTaaatataccttttttttttctttcaccttaTATTGAGTCTCATGCTGCCAGACCTACACAGACTACCTGTTAACAACCACTTAATCTAGAGGAAATAAGGTTTTAGTTTGGCTAGTAGTTTCCTCACATGCTGCTTATAAAAATGCCACgttctctgtgtgtctggctGCTGTGGTTTCTGTCATTGTGCAGGACTCCTGGACGTCCACCGGGAGGAGCCAGATAAGCGTGTTTCAAATCCTTGCTGCCTCCAGGGTTGTTGCCAGTGAACGGTGAAGCAGCCCACTTGCTTGTTAGCCGATCGGTGCTTCCTTTAGGGTCACTGAGGTCTGAGGTCCTGTCTATGGGTCCAGATGCCACGAGCAGAGCTCACCAAACACTACTTCAGCCGCTAGGATTTGAACAGATACAAGCTGCTATCAAACCAAGAGCTCAGGCTAAACTCCTAGGCTGGAATATTTAGCACACAGAcagccaccccccccacacacacacacacaataatagaACAGTCTATCCTGTGTTATTCGTGACCCCTTTTGGAGTCTGTATTGAGAAGGAAAGGTTGCCTGAAGCCCAGGTGTACAGTTATGTTAAACAGGCAGTGTTTTCCAGAATTAGGGCACAAGTCGACCATATGATGAGCATCGGGACGCACATGAAAAGAGCCACCTGTTGACTATTTCATAACAAGTAGACGAaatgcacaatgtttttttccttttcgaGACAGGCACTCCCATATGAATGTATTCCTCACTTCCTGTGTGGACAGATTGAGACGTGCCCACCTAAATGCCCCATTCAAGCCCCACCTAAACTGCAATTGTCTGCAAGGGGTGAGGTTAATATTGGGGGAAAAAACCTGgacctttttagtttttttttgaaAACCCATGTATAACCTAAAGTTGCTCCCTAGATAAGAACATGAGAATATATAGactatatcatatttatttaatttgtttttggagCTTTAATATGTACTATGACAAAATATtaatcacagaaaatgtaacTCACTGAAAGGTCCTATACTTTCTCAAGCCTGTGAATCTTACTggaaagaaaattagaaaaataatagatGGGCAGTAGTAGAGcataagttttgttttgtttgttttctcctttttaatCCTACTGGGAATTGGGTCTCAGTTTGCACTTTGTTACTTAAAAGAAGATGACTTCTCAATGTCTGTTTCAGTAGTTTCCCTGTAGCTCCACATGCATGCTTGTCACaagatattttttaacaaaattattTGGTAAAAGTAATGttggaaaacatacattttaaacttgcacCTTCTTTGAGTtcatgtctgtttattttaaaccagaCTCTCTTATTCCATCTCATAGTGCAATTGCCGTATAGATTGTATACTTTAGACCTACACatacagataaaacaaaaagtacttGTGTAAAATTTTGTGTATGTAACAGTGTAttcaagaggaaaaaataataaaatattctttTATCA

Function

GO:

id name namespace
GO:0015886 heme transport biological_process
GO:0015232 heme transmembrane transporter activity molecular_function

KEGG:

id description
K15380 SLC48A1, HRG1; solute carrier family 48 (heme transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63971 lncRNA upstream 54035 10220233 ~ 10222915 (+) True G51157
TU63944 lncRNA upstream 205751 9979398 ~ 10071199 (+) True G51134
TU63938 lncRNA upstream 301743 9973296 ~ 9975207 (+) True G51129
TU63911 lncRNA upstream 339198 9915494 ~ 9937752 (+) False AMCG00008725
TU63900 lncRNA upstream 482731 9792138 ~ 9794219 (+) True G51094
TU64049 lncRNA downstream 273481 10558639 ~ 10563099 (+) True G51209
TU64050 lncRNA downstream 279216 10564374 ~ 10564940 (+) True G51210
TU64051 lncRNA downstream 281579 10566737 ~ 10567811 (+) True G51211
TU64052 lncRNA downstream 284552 10569710 ~ 10569936 (+) True G51212
TU64072 lncRNA downstream 324588 10609746 ~ 10673784 (+) True G51220
AMCG00008738 mRNA upstream 1739 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008736 mRNA upstream 57584 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008727 mRNA upstream 345435 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008725 mRNA upstream 351054 9915494 ~ 9925896 (+) True AMCG00008725
AMCG00008726 mRNA upstream 366177 9861819 ~ 9910773 (+) True AMCG00008726
AMCG00008742 mRNA downstream 26424 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008745 mRNA downstream 326225 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008746 mRNA downstream 333568 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008749 mRNA downstream 407377 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008753 mRNA downstream 512613 10797771 ~ 10803672 (+) True AMCG00008753
TU63913 other upstream 345869 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 345869 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 960799 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 420320 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 699732 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 1175205 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2430336 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2557557 12842715 ~ 12846233 (+) True G51756

Expression Profile