RNA id: AMCG00008738


Basic Information

Item Value
RNA id AMCG00008738
length 576
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00008738
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10258446 ~ 10275211 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCGTTCCCCCCGGAGCAGGGCTGCGTGGAGCGGGGCAGATAACGCGGCACGGCGGCCGTCCGGGCCAGGGCAGGGGGCGAACAATCACGTGTGCCGCTGCGGAAGACAAGAACGCCTCCCAGTGCACTGTCAGCGAGGATGCAAGGCCAGCGGGAACAGCATGGTCTGAGACGGAGAGCCCCGGGGGCCAGCGGAGGGACAGGACTCTGTGTTCTTTTTCCCCAGAGCACCGATTCTTCTCAAAGCTGGTGGAGAGGAAAAGGAGGGAGGGGAGCGTGGCTGTGTTGCACTGGTACTCCAAAGCCACTGGGCCCAAGGACATGGCACAACATTCTCGCTTAAGTCGTTCAGCTCCTGGCTCTTACACAGCAGCACCGGCTCAGCAGccaatacagaaaacaggaggcTGCAGTATTGCTTATGTAGACAAGCGATATGCCAGCAAGGGATTTGCGTCCTCCAGACCAGAGGCGTCGCTGCAGGCACGTTGTCTCCCTAACCCTGGCGAGAGGGACGGGGATGTTTCTTGCCTTGGCACTTCCCCGCAGCTCGGTTGTAAACAGATGATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63971 lncRNA upstream 35531 10220233 ~ 10222915 (+) True G51157
TU63944 lncRNA upstream 187247 9979398 ~ 10071199 (+) True G51134
TU63938 lncRNA upstream 283239 9973296 ~ 9975207 (+) True G51129
TU63911 lncRNA upstream 320694 9915494 ~ 9937752 (+) False AMCG00008725
TU63900 lncRNA upstream 464227 9792138 ~ 9794219 (+) True G51094
TU64049 lncRNA downstream 283428 10558639 ~ 10563099 (+) True G51209
TU64050 lncRNA downstream 289163 10564374 ~ 10564940 (+) True G51210
TU64051 lncRNA downstream 291526 10566737 ~ 10567811 (+) True G51211
TU64052 lncRNA downstream 294499 10569710 ~ 10569936 (+) True G51212
TU64072 lncRNA downstream 334535 10609746 ~ 10673784 (+) True G51220
AMCG00008736 mRNA upstream 39080 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008727 mRNA upstream 326931 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008725 mRNA upstream 332550 9915494 ~ 9925896 (+) True AMCG00008725
AMCG00008726 mRNA upstream 347673 9861819 ~ 9910773 (+) True AMCG00008726
AMCG00008721 mRNA upstream 522708 9704582 ~ 9735738 (+) True AMCG00008721
AMCG00008737 mRNA downstream 1739 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008742 mRNA downstream 36371 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008745 mRNA downstream 336172 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008746 mRNA downstream 343515 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008749 mRNA downstream 417324 10692535 ~ 10719316 (+) True AMCG00008749
TU63913 other upstream 327365 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 327365 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 942295 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 430267 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 709679 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 1185152 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2440283 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2567504 12842715 ~ 12846233 (+) True G51756

Expression Profile