RNA id: AMCG00008741


Basic Information

Item Value
RNA id AMCG00008741
length 4755
RNA type mRNA
GC content 0.57
exon number 23
gene id AMCG00008741
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10338325 ~ 10370316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCGGATGTGAGCCCCCCTTTGTCTGTGGCTGTCCCTCAGGCTGCCCCAATGGACCTCCGCGTAGGCCAACGCTTAGTGCGGCCCGGCTCTGACACGGCCATGCTGACCTccatcccccaccccctgctcATCAGCCCCTTCCCCGGAGCCCAGCCCTGCACACAGATCTCTCACGCTCAGCTGCAGCAGCACATCCGGTTCAACATGGAGCAGCAGAGGAGGCgtgagcaggagcaggagaaaCAACAGGAGCTGCAGAACCTATGGCACAAGGACAAAAGCAAGCAGAAGCTCGCCTCCAATTTGACGCCTCCCTCTCGGTTGGCAGGTGCCGTGGCCAGTACAGCGGTCAAGCAGAAACTACAGGAAGTGATCCTCAAGAAGCAGCAGGCCGCTTTGGAGCGTACCAGCTCCAACCCTCTCAGCAACACCCCCGTGGCTTACAGGGCGCTGGCTCCAGACCCTGACCTGCCCCCTTCATCCCTAATGGTGGCCCCCCAAGCCCAGCCCCCCAGCGACACCCACGAGGATATGCCCCTACGCAGGACAGCCTCGGAGCCCAACCTGAAGGTCAAGAATAAGCTGAAGAAACATCTGGGCACCCGGAAGAGCCCGCTAACACGCAAGGAGAGCGCCCCCCCGACTGTAAAGCAGAGAGTGCCTGACACTATAGACTCGTCTCCCAGCAGCAGTAGCACCCCGGTATCTGGCTGCAGCTCCCCCAACGACAGCCTGCCCACTGAGAATGGAGTGCTGCCCCACACAGCTGGGGTCTGCCACGAGGCCCAGCGGCTGCTCCTACAGGATGGCACCCTGGCACACTTTGCTGTGCAGAGTCCTTCCTCCACCCTGCCCACCATCACCCTGGGCCTGCCAGCCAACACCAAGGGCGATGCTGACCTGGGCTCCCTGAAAGCAGGGCGGCTGCCTGTCTTGTCCACCTCCCAGGTCTACCTGCCCATGGGGCTGGAGGAGTCCAGTGGGCCGCTGTCCCCCCGGCTGCAGCCTGTGGTCATCCTGGAGCCCTCCGGCCTGATGCCGCTGGTCACTGttcCAGGTCTGGGCCCGATGCCCCTGCAGTTTGCCTCCCCGCTGGACAGAGTATCCGCCCTGACCCCCCACAAGCCCCTGAGCCGCACGCGCTCAGAGCCACTCCCCCAGAGCCCTCGGCCCCTGCCTcagcagctcctgcagcagcacCAGCACACCCAGCTGCTGGAGAGACTCAAACAACAAACTCACCTGGGCAAGGTAGGGCACTGCAGTCGCCCCGTGACATCAGAGTggaacacactgcactgtgctgcgCTGCCCCTACACAAcgcactgcactgtgctgcgCTGCCCCTACACAACGCACTGCACTTTGCTACACTGCCtctacacaacacactgcagctgAAGATTGAcatgctgtgtctgtgtccgtCTTGTCAGCTGATGGCCAAGTCCAGCGAGAAGCCCCGCCTCCGACAGATCCCCTCCGAGGACATGGACTCCGAGGAGGCGGGACACGGAGACGCGCACCAGGGCCGACCCAGGGCGGAGTCACTGCGAGAGTCGGAGTCTGTCGGGGCAGAGGGGGTGGAGCACGAGCCGCAACACCAGCAGCCTAACCTGCACCACACACTGATTCTCAATCAGtcattACTGTGGGAGAAGCAGAAGCAACTCCAGCAGCTGCAACAAATGCGCAGACAGACTGTGCAGATGGACACATTGGGTGTTCCCATGGTGCTCAGCGCCCACCGCCCGCTGACCCGCGCCCAGTCCTCCCCCGCCTCCGCCACCGTCACCGTCACCCTCCCCGACAAGAGCCTGGCACTTCCTGTCCAGGACTCGCCCACCAAGCCGCGCTTCACCACAGGCCTTGTGTACGACTCGCAGATGCTGAAGCACCAGTGCACCTGTGGCGACAACAGCACTCACCCGGAGCATGCTGGGAGAATCCAGAGCATCTGGTCCAGGCTTCAGGAGAGGGGGCTGAGGAACCAGTGTGAGAGTATCCGGGGCAGGAAAGCCACCCTAGAGGAGCTGCAGTCGGTCCACTCGGAACGCCACGTCCTGCTGTACGGCACCAACCCCCTCAACCGCCTGAAGCTGGACAGCCGCAAACTGGCAGGAATCCTGTCCCAGCGCATGTTTGTGATGCTGCCGTGCGGAGGTGTCGGGGTGGACAATGACACCATCTGGAATGAGATGCACACGTCAACAGCTTCTCGCATGGCGGCTGGCAGCGTGACTGAGTTGGCGTTCAGGGTGGCCAAGGGGGAGCTGAAGAACGGTTTTGCCGTCGTGAGACCACCGGGACACCATGCGGACCACTCCAACCCTATgGGCTTCTGCTTCTTCAACTCGGTGGCCATCGCCGCCAAGCAGCTCCAGCAGAAACTGAGCGCCAGCAAGATCCTCATCGTGGACTGGGATGTGCACCATGGCAATGGTACCCAGGAAGTATTCTTTAATGACCCCAGCGTCCTGTACATCTCGCTGCATCGCTACGACGACGGCAACTTCTTCCCTGGGAGTGGAGGGCCGACTGAGGTGGGCTCTGGTCCTGGGGTGGGCTTCAATGTCAACGTGGCGTGGACTGGAGGTCTGGAACCACCAATGGGGGACGCAGAGTACCTGGCAGCATTCAGGACTGTGGTGATGCCCATCGCCCAGGAGTTCTCCCCGGACGTGGTTCTGGTGTCGTCCGGGTTTGACGCCGCCGAAGGGCACCCGGCACCACTTGGGGGATACAGAGTGTCGGCGAAATGTTTCGGGTTCCTGACGCGCCAGCTGATGAGGCTGGCAGGGGGCAGGCTGGTGCTGGCGCTGGAGGGGGGCCACGACCTCACGGCCATCTGCGACGCCTCGGAGGCCTGCGTCAGTGCCCTGCTGGGCAACGAGATGGAGCCGCTTCCAGAGGAGGTTCTCCGGCTCAGGCCGAATGCCAATGGGGTGCGATCCCTGGAGAGGGTGCTACAAGTGCAAGGTCAGTACTGGAAGTCTGTGCAGCGATTCCACCCCACGGTGGGCCTGTCCTTCCTGGAGGCTCAGAAACATGACGCCGAGGAGAATGACACCGTCACCGCCCTGGCCTCACTCTCCGTGGGAGTCAACCCTGGGGTCGTCAACAAGAGGCCTCAGGACGACCCCATGGAGGATGACGACGAGGACTCCATGTAGGGAGCGCTGACCTTTGAACTCCGTGCTGCGGAAATAGCCAATCCCCTTGAGCTGTGGTACTATGCAACATCCCGACAGGTGCTCTCTGGGCCCTGCCTCACTGCCTCTACACCGACTGTGCCTCACTCGCCAACACCAAGCCTCACCTCACCGGCACCCAGCAAATCATTCCAGGACTGGCGGACCGACCAACGTGGCGCCGGCACTCCCGGCAAGCCACTGAAACGAACACGCGCTGTGTTTTTCTACTTCGGTTGATCAAGCACAATCTTTCTGCAGTGCACATGGAGGAGCTATTACTGTACATAGGAAAATACTTTATAACTGTCCTGTACCACGATGTCAAGataattttttcttctgaaagaatGGATGCTATTTTTAAAGCACCCTAGACCAGTGGAAATTCCACATGCACCTGTATGTCCCTTCATCGGGCACTCTGACGCCCCCTCCCACCCCATCCCAACTGTGGATTAAGTGCCTGGGATCGTTAACACTTATTTTCAAGAGCCGGGGACTCTATTCTATTCAAAGATCTATTCAAAGCCCTTTGCTTCTGTCTCCGGCACTGGTTTGAGTGTGGATAGGTTTGTTTAAATGGCTCAGTTCCAGTCAAGCCTTTTTTTTGATCAGCAGCTTTGTGGGTGCTACTCAATACTGCAATTGTGTGCCAGATACACTGCACATAGAATAGGCCATTTATTTCTTTGAAGAAAGAGACATATTCTTTTTTACCTTCCAGGAGGGGGACATGGCCTTAAGACTTTGACAGAGCTTTTAAGTATTCACATCTGGCCACTGTGGAATttgttgttcattgtttttattaatattattgtaatttaaccACTAAGGAAGTAGAagaagatgatgaagaagaagTAGTTTAAGGAAAGAAATGCAACACAGCAACCTGTGGTTTGTGAACTTTGCACTGTGCATTCCAAAATGTGAACAATGAAACTTTCCATCACCGGGGCGttggatggggtgggggggaatctaggttatttaattcttaattgagtagacttttatattttatattttgaagtaACTTTGAgattcttctctttttttttatacatggAAAAAGGCATTTTGTATTTGGCCAGATCTGGGTCAAAATGAAGACCAAAGACTGTCATAATTCATTCCACTGTGGTCCGAGGATTGTTCCATGCGCTCGGATGATTTTGCCACCTCACGCCTAGTTGCCTTTGTACACATGCGTCACTGCTGGATAGTCTTTCGAAGCTAAGGTGAAATGGTTTAATCAACTAATCCAAACTTCTGACACGTGAGGCCCACAGCCTATAGCATCTGGAGACGCACAGAATTCCTTACAATTCCTTCAATTGTTCTTCGCATTACCTTGGGACCAACGGACATGATGTGTGGGAAAAGGAACCGATTTGACTGAGAGTAACTGAAGTTGGAGACAGTTGGAAAGCAGTGAAAACCTTGTGTTTGCTTTCACACCTGTAACTGCCCTTAGACACTGCGACCTGAGCTGGGCAGACAGCTAATGCACTTAGCAGAAGATTTTCAATGTCTTAGATACaggggctggggg

Function

GO: NA

KEGG:

id description
K11408 HDAC7; histone deacetylase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63928 lncRNA downstream 409065 9927245 ~ 9931102 (-) True G51120
TU63909 lncRNA downstream 429367 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 600911 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 761784 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 814480 9521354 ~ 9525687 (-) True G51044
TU64116 lncRNA upstream 298395 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 305440 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 305440 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA upstream 305440 10675756 ~ 10712485 (-) False G51241
TU64111 lncRNA upstream 305440 10675756 ~ 10712485 (-) False G51241
AMCG00008739 mRNA downstream 82316 10221420 ~ 10257851 (-) True AMCG00008739
AMCG00008740 mRNA downstream 146902 10183119 ~ 10193265 (-) True AMCG00008740
AMCG00008734 mRNA downstream 274833 10059303 ~ 10065334 (-) True AMCG00008734
AMCG00008731 mRNA downstream 305570 10015724 ~ 10034597 (-) True AMCG00008731
AMCG00008730 mRNA downstream 342076 9979487 ~ 9998091 (-) True AMCG00008730
AMCG00008743 mRNA upstream 102214 10472530 ~ 10489766 (-) True AMCG00008743
AMCG00008744 mRNA upstream 190550 10560866 ~ 10574901 (-) True AMCG00008744
AMCG00008747 mRNA upstream 284695 10655011 ~ 10662191 (-) True AMCG00008747
AMCG00008748 mRNA upstream 300633 10670949 ~ 10678973 (-) False AMCG00008748
AMCG00008750 mRNA upstream 349176 10719492 ~ 10725176 (-) True AMCG00008750
TU63794 other downstream 946940 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1680150 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1968837 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 2045813 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 203167 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 306947 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 306947 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 309962 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 309962 10680278 ~ 10682873 (-) True G51241

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043600 True 1293 mRNA 0.56 12 NC_007134.7 16796 ~ 38054 (-)
grasscarp (Ctenopharyngodon idella) CI01000196_00187948_00212382.mRNA True 2620 mRNA 0.55 17 CI01000196 187948 ~ 212988 (+)