RNA id: TU64025


Basic Information

Item Value
RNA id TU64025
length 3702
lncRNA type sense_over
GC content 0.44
exon number 3
gene id AMCG00008741
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10338325 ~ 10370316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATGGAGCCGCTTCCAGAGGAGGTTCTCCGGCTCAGGCCGAATGCCAATGGGGTGCGATCCCTGGAGAGGGTGCTACAAGTGCAAGGTCAGTACTGGAAGTCTGTGCAGCGATTCCACCCCACGGTGGGCCTGTCCTTCCTGGAGGCTCAGAAACATGACGCCGAGGAGAATGACACCGTCACCGCCCTGGCCTCACTCTCCGTGGGAGTCAACCCTGGGGTCGTCAACAAGAGGCCTCAGGACGACCCCATGGAGGATGACGACGAGGACTCCATGTAGGGAGCGCTGACCTTTGAACTCCGTGCTGCGGAAATAGCCAATCCCCTTGAGCTGTGGTACTATGCAACATCCCGACAGGTGCTCTCTGGGCCCTGCCTCACTGCCTCTACACCGACTGTGCCTCACTCGCCAACACCAAGCCTCACCTCACCGGCACCCAGCAAATCATTCCAGGACTGGCGGACCGACCAACGTGGCGCCGGCACTCCCGGCAAGCCACTGAAACGAACACGCGCTGTGTTTTTCTACTTCGGTTGATCAAGCACAATCTTTCTGCAGTGCACATGGAGGAGCTATTACTGTACATAGGAAAATACTTTATAACTGTCCTGTACCACGATGTCAAGataattttttcttctgaaagaatGGATGCTATTTTTAAAGCACCCTAGACCAGTGGAAATTCCACATGCACCTGTATGTCCCTTCATCGGGCACTCTGACGCCCCCTCCCACCCCATCCCAACTGTGGATTAAGTGCCTGGGATCGTTAACACTTATTTTCAAGAGCCGGGGACTCTATTCTATTCAAAGATCTATTCAAAGCCCTTTGCTTCTGTCTCCGGCACTGGTTTGAGTGTGGATAGGTTTGTTTAAATGGCTCAGTTCCAGTCAAGCCTTTTTTTTGATCAGCAGCTTTGTGGGTGCTACTCAATACTGCAATTGTGTGCCAGATACACTGCACATAGAATAGGCCATTTATTTCTTTGAAGAAAGAGACATATTCTTTTTTACCTTCCAGGAGGGGGACATGGCCTTAAGACTTTGACAGAGCTTTTAAGTATTCACATCTGGCCACTGTGGAATttgttgttcattgtttttattaatattattgtaatttaaccACTAAGGAAGTAGAagaagatgatgaagaagaagTAGTTTAAGGAAAGAAATGCAACACAGCAACCTGTGGTTTGTGAACTTTGCACTGTGCATTCCAAAATGTGAACAATGAAACTTTCCATCACCGGGGCGttggatggggtgggggggaatctaggttatttaattcttaattgagtagacttttatattttatattttgaagtaACTTTGAgattcttctctttttttttatacatggAAAAAGGCATTTTGTATTTGGCCAGATCTGGGTCAAAATGAAGACCAAAGACTGTCATAATTCATTCCACTGTGGTCCGAGGATTGTTCCATGCGCTCGGATGATTTTGCCACCTCACGCCTAGTTGCCTTTGTACACATGCGTCACTGCTGGATAGTCTTTCGAAGCTAAGGTGAAATGGTTTAATCAACTAATCCAAACTTCTGACACGTGAGGCCCACAGCCTATAGCATCTGGAGACGCACAGAATTCCTTACAATTCCTTCAATTGTTCTTCGCATTACCTTGGGACCAACGGACATGATGTGTGGGAAAAGGAACCGATTTGACTGAGAGTAACTGAAGTTGGAGACAGTTGGAAAGCAGTGAAAACCTTGTGTTTGCTTTCACACCTGTAACTGCCCTTAGACACTGCGACCTGAGCTGGGCAGACAGCTAATGCACTTAGCAGAAGATTTTCAATGTCTTAGATACaggggctggggggtgggggggcgggaggACGGGGAGAGAaagatgatgttgatgatgggATCCCTTTCACTTAAAAGAAAAGATCATTCCTATTTGTTGTTGATTGTATTACAAAGACCAGTATTTTAACCTGTGGATAGATGAACctactgtattgtatatttgaTAGTCTTAATATCTACTTcaaaggcaaaaaaacaaacaatgttatTGTGTAGTTCTTTTTATtattgggggttgggggggggcatATCTCAACTGTATGAAAAGACAACATTAGGGTGTCCTGTGCAAggccacccccccaccacccactaTACTAAAAGCAAGAATGACTTATCAGGTAACCCTTTACTTGTTGTATCTTTTGGTTTATCTGAGTGTGTTGTTGCAGATGTGCGTAGTTCTTCTCTCGTGGGGAAAATAATCCGTAAGCAGGTCCAATGTTATTCCAGTTGGGCTGTGATGCTGTTCCATGGCCACCAGAACCACCTCGAGAGAGTTCTGCTCTTGGCATTTAGAAACACTGGAGCCAAATATCGACTAATGCACCTAATGCAGCAGGCCGAGATACGGGGGTCCGTTTAGCTTATGCTCCTATCAGCACTTAATGTAAAGAGACGGGCATCCAAATTGGCAAAACCTTCCTCTTGAGAAGCCCAGATGAACGGGATGTTTGGGTAAATTGGTAAATCGTCTGCTCAGCACTCTGAGCCAGACCAGTCACTTGGATCAGGAGAAAGCAGGACCAAAACCAGGGGGTAGGTTTGTATTCACCACTCACCCGCCCAACGGGATCTCCACGCCCTCGCTTATGTAGGTTTACCGTAGTAAAACCAGGTTAAAAGTGTGAAAAACCCAATGTTTCCCAGGctaaacttttatttgtttttcaatcctTTGGAGCTCTTGTTCCAAGTAGACAGTGTCTCAAAGTGCTTAACACTGAGTCATATACAGCCAGAAAGACCTGGAGCCAGTTGTGTAAAACATCTCAAGTATTGAATCACTTACAGTGAGTATTAAAtctaacagttttatttttattttttccccttgccTCCAGTGGGCTCAGGTTGTGTTTTGAAACGCCCTTAATCTTGAGGAACGCTTGAGGGGAATCTGATCTCAAGTTGTTTTACGCGACTTGTGTTTATGAAACGAGAGGAGCCCACACTGCCCACAGCTTTACAATCACCCTTCACTAAAGGTGctacatatttttgttattatgacTCAACAGAATCACATCACGGCCAGGTCTGTGCTACATTGGGTGCAAATTCAGGACTCTGAGCAGATTTTGCTCAACAGATCCCATAGGACTGTATTGTAATGCTTAAAATGGCTCTGACCCAACAGCAGCATTGGCGTTGCCCAttgctgtttgtctttttcttgagttttctgcattttaaaagggagCAGATCAATTAAGTTATGGATACAGAATGTGTTCATGCAGTGTTCCTTGCACCAAGGGGGCTCCTTGTCTTAATCAGCGAGGTATTTATTGGTGCTTGTATtgcttcttttttgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatagcTGCAAAAAAACCAAAATCCTACACCGATGTGCCTTGAATGGTTTGTTTGGCTCCATGTAGAGATAGCCTCCATAAACTGGATCtttaaacagaaaagaaaagaaagaaaaaacaaacataaaacaacaaaagcatcttattttttttttctcctgtatgtacagataattattttgtactgtgGTTTCTCTCCTttattaaaagggaaaaaaaggagtTTGGGGTTCTTTCCATGCCAGTTCTTGCTCTTCCACAGCCATAAACTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63928 lncRNA downstream 407223 9927245 ~ 9931102 (-) True G51120
TU63909 lncRNA downstream 427525 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 599069 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 759942 9577268 ~ 9578383 (-) True G51057
TU63838 lncRNA downstream 812638 9521354 ~ 9525687 (-) True G51044
TU64116 lncRNA upstream 325546 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 332591 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 332591 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA upstream 332591 10675756 ~ 10712485 (-) False G51241
TU64111 lncRNA upstream 332591 10675756 ~ 10712485 (-) False G51241
AMCG00008739 mRNA downstream 80474 10221420 ~ 10257851 (-) True AMCG00008739
AMCG00008740 mRNA downstream 145060 10183119 ~ 10193265 (-) True AMCG00008740
AMCG00008734 mRNA downstream 272991 10059303 ~ 10065334 (-) True AMCG00008734
AMCG00008731 mRNA downstream 303728 10015724 ~ 10034597 (-) True AMCG00008731
AMCG00008730 mRNA downstream 340234 9979487 ~ 9998091 (-) True AMCG00008730
AMCG00008743 mRNA upstream 129365 10472530 ~ 10489766 (-) True AMCG00008743
AMCG00008744 mRNA upstream 217701 10560866 ~ 10574901 (-) True AMCG00008744
AMCG00008747 mRNA upstream 311846 10655011 ~ 10662191 (-) True AMCG00008747
AMCG00008748 mRNA upstream 327784 10670949 ~ 10678973 (-) False AMCG00008748
AMCG00008750 mRNA upstream 376327 10719492 ~ 10725176 (-) True AMCG00008750
TU63794 other downstream 945098 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1678308 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 1966995 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 2043971 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 230318 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 334098 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 334098 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 337113 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 337113 10680278 ~ 10682873 (-) True G51241

Expression Profile