RNA id: AMCG00008743


Basic Information

Item Value
RNA id AMCG00008743
length 6848
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00008743
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10472530 ~ 10489766 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAGCATGCAGGGGGGGCTCTGTCAGCACCTTACAGAGCAAACGAGGCAAGAGTGAGCAGTCTAAGGAGGGAGCTGTGGTGCTGGGCTTGTGTGGCGAAACGAGTCCTCCCCGCACTATCCTCACCCCCCCATGTCTCTGCTCTCTCCACAGCCATGGACTCAATGGCAGTGAGCACCTCAGCCATGGCCTCCGCCGATGAGTTTGACCGCAACGCGCCGCGCATCTGTGGAGTCTGCGGAGACAAGGCCACTGGCTTCCACTTCAATGCCATGACGTGCGAGGGCTGCAAGGGTTTCTTCAGACGCAGTATGAAGAGGAAAGCCAGCTTCATCTGCCCTTTCAACGGGAGCTGTACCATCACCAAGGACAACCGGCGGCACTGCCAGTCTTGCCGGCTGAAGCGCTGCGTGGAGATCGGCATGATGAAAGAGTTTATCCTGACCGACGAGGAGGTGCAGAGGAAGAAGGATATGATCCTcaagaggaaggaggaggaggcccAGAGGGAAATGTCGCGGCCACGGCTCAGCGACGAACACAGCTCCGTCATCACCACACTGGTGGAGGCCCACCGCAAGACCTACGACGACTCCTACTCCGACTTCAAGCAGTTCCGGCCGCCAGTGAGGGCTGGCCCAGTGACGCGCAGTGCCAGCCGAGCCGCCTCCCTCCAGTCCCTATCGGACACCTCCTTAGATTCCTTCAGCCAATCGCCAGacTCGATGGACATGAATCTGATGAACTTGAGCAACTTGCTGATGATGTACCAGGAGAGCAGCCCCCAGTCCCCGGAGGACCCCGCCCAGCTCTCCATGCTGCCCCACCTGGCAGACCTGGTCAGCTACAGCATTCAGAAGGTGATCGGTTTCGCCAAGATGATCCCCGGCTTCAGagACCTGACCTCTGATGACCAGATCGCCTTGCTCAAGTCCAGCGCCATCGAGATCATCATGCTTCGCTCCAACCAGTCCTTCAGCCTGGAGGAGATGTCCTGGACCTGCGGCTCCCCCGACTTCAAGTACTGCATCAGCGACGTCACCCGGGCCGGACACACCCTGGATCTCCTGGAGCCACTAGTGAAGTTCCAGGTGGGCCTGAAGAAGCTCAACCTGTGTGAAGAGGAACACGTGTTGCTCATGGCCATCTGTTTGCTCTCTCCAGACCGGCCGGGGGTGATGGACCACGCTCGCATCGAGGCCCTGCAGGACCAGCTGTCCGAGGTGCTGCAGGCCTACATCACCGTGAACCGGCGTGGGCGGCTGCTCTACCCCAAGATGATCCAGAAGCTGGCTGACCTGCGCAGCCTGAACGAGGAGCATTCCAAGCAGTACCGCTGCCTGTCCTTCAAGCCCGAGCACACCACCCAGCTCACCCCACTGGTGATGGAGGTGTTCGGCAACGAGGTGTCCTAGGTGTGCGGCGGGAGGGTGCGGCCGGGTAGGGATCCcagcgagagggagagaagcagaGCAAATTCTATATgtttatatctatttttaagACTAGTTTCTCTGATCATGAAAGGATAATTTAGCTGGTATGTATTATTCTGTCCTGCAAATAAGTGCATTTATTGGTGTGTGGGTAGGTGGGTGTGTGTGCCTCGCGTTCTGGGGCGTGACAGGTTACACGTAACTTGTGCCCCTGTTCTGGGTGGCAGTTTCTGTGAATTgggaatatattttgttatttttgttaagcAAGGACCTAAGGTGTATAGACCTGGTTAGAAGATGGATTTCTCCTAGTAATGTCCCCAGACGCTGTTTGCCTGGTGAATGCAATGTATCCTCTCCATCGGcctgctgtacacacacacccatagctTACTTAAAACACGCCTGCGTTACGAGCTGCCTTCTGTTTTccgtttgtgtttttaatgtctgtATATAAGGATTTTAAGATAACCACTTCTTCGTGGTCCAGGCTGCAGAAAGGATGTTTctgtaggttttgtttttaagattggAGAACACACTTGGAAGAGCAATTCCACTCTCCCCCCACACAGACGCACTTTCTCAGTGACCTTCAGCTTTAGCAGCTCTGCGCCAGCGCTGACCGGTGACTTTTAAGATGCAGCTATCAGGATATGGACGGCCGCCTTTTATTGGTGCATGCTGCCCGCCAAGAACACAATGAGCAGGAGGGTGGATTTGTACATCGGATGGACTctttacttcatttttttttttcttttggggaAAAGGGGCTGAATCGCATTAAAGAATCCTTCAGCTCAGTTCAAACGGGAAGTGGATGTATTGTATTCTGCAGAAACTCTTGAATCTGTGGATTGTCGTGCCCCAATGGTGGCCTGCCTGTCCTCCCGCCGGCATCACAGCCAAAGTGAATGTCGTCTCGATCCTGGACCTCTGCTATACagtaaatgggaaaaaaaaaaaaagaaaaaaaaaaggtccgTTTCTCCTGGTTGTTCTCTTTATTGTGCTACCCTCTGGTGGTCTTTTGTGTAAATGCAATGtgttctgtgtatatataatatatatatacatatatatataaatataaactaaatacgTAATGCAAGGATAATTTAAAACTCtgatatatatgcaaatattatgattttttttcctcctttagATAACACATAtggcttttgttatttttttgtatgggCGGGGGGGTCTGTTGATTTAAATGGTGAAGTGGAAGGGGAGGGTTTTTAAGATGGATTTTAATGTTCATATtatgctgatatttaaataggacagaatgagagagagatgataTCAGCTGCAGTTTTCAGTGGGGTCTGACTGGCTGCTTAGTAGCTAAACGTGCTTTCAGTTTGTACAGCCTTCACTCCAATCTCTCTCGGTCTGCTTGTGTGGCGGGTTGTGCAGGTGACCAACGCTTCATGCAGTGTCACCTGGGGCTCGATGAGATTTATTCTTTCTCGATGCTTCCTGGAGACGCCCATTTCCTCATGCCTTTCTGGTGTGCTCCCTTGTAGTGACATCAGATGaaagaacaaatgtaaaaatgaattataaaaaaaataatcaatgtacacacacacacatgatctTCAGGTTGCTACAgcaggatgaaggcctccccaagataaagaaatatatatatgtgtatgtttgtgtgtgtgttataaattTTATGCTAATGTGGCTCCCTGCTGTTCATCGCTAATTGCCACAACCTGCAGTGTGTAAATGTGGGtctgtaatctgtaattaattatgGTTCTAGAaaagactgacagactgactgacagaaaGAGGACAATTCTGCTCAGGAAATGTTTTGGTATGTGACAGTGTACTGTACCAAATGAGCAAGGCATGCTGTGTAGATTACACTCGTATTGGATGTAGTGAGTATGACACGTACAGATTCTTTGGTTTCATGGTGAAGTTTTTATGTTTGAGATCTGCTCTTTCTTACAAGTGCCAAAGGGATCCCCTCTATTTAAGTGCCAAgcttgaattaatatatatataatatatataaaccacaAAACCATTGTTGTAGGAGGATGGATAATAGATGctcctgtgtttgtttaagtTACTGACAATAAAGCAGTATATGGCTGGTGTGAGTAGTGCTTTCCTCACATGGTACAGATCTCATGAAAGTAAGGAAGGCGTGGCCATCACAGCTTGAGCCCGGTCCAAACAGAGCACGTGCCACGTCAACTTTAATATCTTCCTGTCTGTTCAAAATGGCGCACAGCTCTTGAACCAAAGCAAACTACCTCTGATGCTCCCTACCGtttgcacagtttttgtttcTGACCTAGATATTGGATAATTCCCTCAAACCTAGTTTAGTCTGCCCCGTTTTCGACTTATTTTACTTACAACTTACCTAATTGTTTTGAGTGCAGCTTTGAACTACAATAGACATCCCTGTACCCTCTTGAATGCTGACAGTGTAATTTTCTAAAAATTGTCATTTCTTGCCTCTGGAACCGGAGCTCAATCAGGCCTAGCTCTCAGTGTATTCATACATGTGCAGAAAAGTAATCAAGGAGTCAATGAGATAAAACAGTTACAgtcttcacatttattttttaattgtaaacgcatgtacattttttgtcaCAAGGAGGTGCCCAAGCTGTGCTTAGATGTTGTTTAGACtattaacagcaacaacaactaATTAAATCCGAATAAAGTTCTAGACTCAAAGCAGAACAGCAGAAGACTTTCTCCATTGCTCCCAGCTGCTTGCTCTTATTAAGGGAGCACTTGCAAGTCTGTCTGCTATATTGTCAGACCCCCGTGGGAGGACCAGTGTTTTATCCCAGCTGTTAACAGTCAGTCTGATTTTAGGGAACTAtttttagtctgttttttttgttcttgttttttctttccctggtTGGTGTGTCACAACATACCTGGAGTCTGGGAAGGGGGCAGCAGCACAGTTTGGACAGGGAGGGTCAGAGCTCTTGGCAGGCCATGGCCGAGCTGCTCTTGGTGTGATGCACTGCCTGTGAAAGATCAGACATTGTGAAAAACCACTGTCAGATTTGACTGAGAACCAGAGGATCGACTGACTGACTTTAACAAGTGTATGAATGCCGTCCGCTTCTAAACGAATACATGGGTAAGAGCACGGTTTCTTTTCAGTTGGTTTGTCTGcttggtgtttttatttgtattttttctctcattatttTATAAGACTGTCAGCCAGTTACAATTCAATGGATTAGGTTTGAAGAGAAAGTACGTGGACCCAAACACGTTCCTGTTTTGAgtctgtttaaaagaaaaacactaccCAGGGGACTTGCTGCTGTGGTTGGTGTCCCTCAGCCCAGAAAGCTGACACTGACCGCCCAACCAGGATGACGGACTGCACACTGTGGGACAGAGCACGTCCTCTGTCTGCTGTCCACATGTCCGCCTGCGGAGACGGAGGGCTGTAAACGGCCCATCACCTCCTTCCTCTGCCCAGAGCTACACTACAGCCTCTGTTACCTCTACATATCGGCCCAAGACAGGGAGCGGCCAAGTAAAGTACTGGTTGTGTGCCTATGGGTGGGGGAAAACAACAAGGGTCAGGTGCGTTGGGCATCGAAGGTCAATGTTTTGAGACTTTTGTTTGGGAGTCTTATTGGAGGAGTTGATTTTCTCTCCCTAGTGCCTCTGTGTGCTGTTCTGTCTGCAGTTACTACAGGGACCTGAATGTCATAAAGGCCCCCCTGAACATAATGCAACTGAGCGTTTCGGCCACTCTGCTCTTTTCCCCGCAACACAGGTATAAATATCAGCCTTCTGCGTGTCGATGTGCATCAAGGCTTGTGTGACACACCAGGACAGGTGTTCTGGTGTGTTATTGgctgctccattttgtgctcaGTGTTGTCACGCGCATAAGGTTTTAAGAGGGCTGGGCCCAGTTTCAACAAGGAAGAGCTTGCGTAGTATATCCAAGTGGAAAGATGGCAAGAatcagtttgttgttgttggggatAGTGCCTTAATTAGTCCTCAGTGTACTGTTTAAAGTCAAAATGGTTTTAAGCAGTTTGTTTCTCCtttggttttccttttctcttttgcaAGATTAAAAAAGgcttatataattaaaaaaaaaaagtgtatgtgGGGGGACAAAATCAGTATAGACCTTAATATGATTAAAATCAACTATATTGCCTTAAAAGGAAGTGACTTGTATTCTTTTGCATCTCTGTTACTTCGCAGAAtgacacaaacaacaacaacacaacttgCATTGAAGACGTACCTCATGTAACCTGACTCCATCTCAGTGAGTCTTACAGAAACTCTGGTTAGTAACCCTGTAGTGCGAGAGGCCAGGCTAGGCCTCAGTTTTGTGCCATTCGGGACAGTTAACCCTTTCCTTTcatgtcattttctttcttgatcTGTTTTACATAGAAGGATAGATTCTACACATCTCTCATGAAACGCAGTGCTTGTGATACTCTTGCCAAGCTTGTGCTGCCGACCCAACTCGCTATCCCGCATGTCCATATTCGACAGTTACAATTATGTTCTTATTACTGTTATTGGTATTCCGATTATAATTGATAGTATTATTGCAATGCTCAGTGTTGTCCTGTTTGTCTTTGTTGCCTTGTACATTTGATTCTGTGTACTGTAAgtagtaaaacaaaattgacaaattcaaataaaaacttgtACGTACTGTGTCGATCACTGTAAACGTCTGTTGGTGGAAAATTATTtggaattaacttttttttttttttttttttaaattacattcctGTAAAAAGTGTGTTTCACAGTTTTCTATAGTGCCGCTCATTCGGTGTGGGTCACGGCTTGGTTCACGGGGGTGTAGTTGCAGTTTTGTTCCACATGGTGCCAGGCTTTACCAGCATGTTCAAGATTCTCTGCCATACTCCAGCCGTGTCAGATCCCTGCTCCTGATTTACTACCGGCTGATTTTGGTGAGTGGAAACGACAGCACTGGGTGAGTGAGTGGAGGGCAGTGGGAAGGGTGAGGCTCAATTTTGGTCTGTCCAGTCCATTAAGGGTTTGTCTGAGCTGATGTGAAGCAGATTCTTGTCATGTCTGTTGCAAGACCATGCTGTCAATTCTGGAAAGACAATTGGGACAACAATATAGTTGAGTATATGGCCATAAAGTGTTTCATTCACATGTGTTTCTCTGTTATATCCTAGATTcaattacattgaaaaaataagacGGATATGAGCTCATTTTCCCGCTTGGctgatataattaaaacatgaaatgatgtagtcaaaatgctaaataaaaaaaaaaagtatttaaagtatttgatTTGGTGTATTATGCATTGTTCTAATTGATTGCTT

Function

GO: NA

KEGG:

id description
K08539 VDR, NR1I1; vitamin D3 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64025 lncRNA downstream 129365 10338325 ~ 10343165 (-) False AMCG00008741
TU63928 lncRNA downstream 541428 9927245 ~ 9931102 (-) True G51120
TU63909 lncRNA downstream 561730 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 733274 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 894147 9577268 ~ 9578383 (-) True G51057
TU64116 lncRNA upstream 178945 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 185990 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 185990 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA upstream 185990 10675756 ~ 10712485 (-) False G51241
TU64111 lncRNA upstream 185990 10675756 ~ 10712485 (-) False G51241
AMCG00008741 mRNA downstream 102214 10340167 ~ 10370316 (-) True AMCG00008741
AMCG00008739 mRNA downstream 214679 10221420 ~ 10257851 (-) True AMCG00008739
AMCG00008740 mRNA downstream 279265 10183119 ~ 10193265 (-) True AMCG00008740
AMCG00008734 mRNA downstream 407196 10059303 ~ 10065334 (-) True AMCG00008734
AMCG00008731 mRNA downstream 437933 10015724 ~ 10034597 (-) True AMCG00008731
AMCG00008744 mRNA upstream 71100 10560866 ~ 10574901 (-) True AMCG00008744
AMCG00008747 mRNA upstream 165245 10655011 ~ 10662191 (-) True AMCG00008747
AMCG00008748 mRNA upstream 181183 10670949 ~ 10678973 (-) False AMCG00008748
AMCG00008750 mRNA upstream 229726 10719492 ~ 10725176 (-) True AMCG00008750
AMCG00008751 mRNA upstream 274250 10764016 ~ 10771654 (-) True AMCG00008751
TU63794 other downstream 1079303 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1812513 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 2101200 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 2178176 8270324 ~ 8294354 (-) False G50712
TU64089 other upstream 83717 10573483 ~ 10603373 (-) False AMCG00008744
TU64119 other upstream 187497 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 187497 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 190512 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 190512 10680278 ~ 10682873 (-) True G51241

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043586 True 822 mRNA 0.59 4 NC_007134.7 45822935 ~ 45825632 (+)